Alternatives and similar repositories for MSSR

Users that are interested in MSSR are comparing it to the libraries listed below

• HenriquesLab / NanoJ-eSRRF
  ☆20Updated last week
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated last month
• aherbert / gdsc-smlm
  GDSC Single Molecule Light Microscopy ImageJ Plugins
  ☆16Updated last month
• UU-cellbiology / DoM_Utrecht
  Detection of Molecules plugin for ImageJ, Utrecht University
  ☆15Updated 2 years ago
• kwolbachia / KTZ-LUTs
  Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.
  ☆11Updated 4 months ago
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆80Updated last week
• CSBDeep / CSBDeep_fiji
  ☆13Updated 4 years ago
• pymmcore-plus / useq-schema
  An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
  ☆19Updated last week
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆73Updated this week
• fmi-faim / napari-psf-analysis
  A napari plugin to analysis point spread functions.
  ☆12Updated 2 months ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated last month
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆22Updated 7 months ago
• MSiemons / REALM
  Adaptive Optics plugin for MicroManager
  ☆12Updated 3 years ago
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 2 months ago
• dbsb-juntendo / descSPIM
  User-affordable and versatile light-sheet microscopy system for cleared specimens
  ☆23Updated 2 months ago
• NEUBIAS / Defragmentation_TrainingSchool_EOSC-Life_2022
  "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…
  ☆15Updated 2 years ago
• abcucberkeley / PetaKit5D
  ☆41Updated this week
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated 2 years ago
• xing-lab-pitt / mosaic-picasso
  ☆15Updated last year
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆47Updated last week
• BiAPoL / Image-data-science-with-Python-and-Napari-EPFL2022
  ☆15Updated last year
• alecheckert / quot
  A simple single molecule tracking pipeline with a graphic user interface for quality control.
  ☆13Updated last year
• dwaithe / ONBI_image_analysis
  This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course
  ☆18Updated 7 years ago
• MicroscPSF / MicroscPSF-Py
  Fast and Accurate 3D PSF Computation for Fluorescence Microscopy
  ☆42Updated 7 months ago
• ries-lab / RiesPieces
  Recipes for open microscopy
  ☆12Updated 4 years ago
• haesleinhuepf / devbio-napari
  ☆49Updated last month
• imodpasteur / ZOLA-3D
  Zernike Optimized Localization Algorithm for 3D single molecule localizations
  ☆19Updated 2 years ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last month
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆42Updated last month