BCHSI / philter-deidstable1_mirrorLinks
UCSF Philter for UC
☆14Updated last year
Alternatives and similar repositories for philter-deidstable1_mirror
Users that are interested in philter-deidstable1_mirror are comparing it to the libraries listed below
Sorting:
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆198Updated 4 months ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆110Updated last year
- ☆18Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆307Updated last year
- System for Medical Concept Extraction and Linking☆420Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆156Updated 2 weeks ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆29Updated 2 years ago
- Open source clinical text de-identification☆142Updated last year
- all scripts used in gatortron project☆124Updated 2 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆95Updated last year
- A collection of papers on automated medical coding from free-texts☆148Updated 10 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 4 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆85Updated 2 months ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 3 years ago
- ☆63Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 5 months ago
- ☆42Updated 2 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Medical Concept Annotation Tool☆511Updated 3 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated this week
- ☆90Updated last year
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆427Updated 3 years ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆70Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆36Updated 2 months ago
- A new collection of 1.7k doctor-patient conversations and corresponding clinical notes/summaries.☆97Updated 5 months ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- PMC-Patients☆101Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆83Updated 5 months ago