snake-flu / type_variants
☆8Updated 3 years ago
Alternatives and similar repositories for type_variants:
Users that are interested in type_variants are comparing it to the libraries listed below
- Systematic ProtEin AnnotatoR☆19Updated 3 months ago
- Read contamination removal☆24Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆34Updated last week
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Intra-species bacterial contamination detection☆24Updated 2 months ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Updated last year
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 5 years ago
- Recombination-free trees☆56Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 2 months ago
- Gene-flank analysis tool☆26Updated last month
- Predict MLST directly from uncorrected long reads☆26Updated 2 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 3 months ago
- ☆27Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- ☆35Updated 5 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆49Updated 6 months ago
- Split Kmer Analysis☆63Updated 2 years ago