kundajelab / DeepBindToKerasView external linksLinks
Convert DeepBind models to Keras
☆11Jul 15, 2018Updated 7 years ago
Alternatives and similar repositories for DeepBindToKeras
Users that are interested in DeepBindToKeras are comparing it to the libraries listed below
Sorting:
- Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding☆17Sep 21, 2019Updated 6 years ago
- Protein design and variant prediction using autoregressive generative models☆24Feb 27, 2023Updated 2 years ago
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 5 years ago
- What exactly are the non-canonical amino acids in the Rosetta database folder?☆12Feb 16, 2020Updated 5 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- Code for paper: Localized matrix factorization for recommendation based on matrix block diagonal forms☆10Jan 27, 2015Updated 11 years ago
- Selective Copying Task with Mamba Model. This repository contains a simple implementation for reproducing the selective copying task with…☆12Jun 3, 2024Updated last year
- Screen interactions with AlphaFold Multimer☆13Mar 10, 2025Updated 11 months ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- Fast implementation of Gradient Boosting Machine (GBM) training algorithm.☆10Aug 26, 2019Updated 6 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆11May 26, 2023Updated 2 years ago
- SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.☆10Apr 16, 2020Updated 5 years ago
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆10Oct 7, 2024Updated last year
- A fast, user-friendly package for self-organizing maps☆12May 15, 2025Updated 8 months ago
- Convert raw AAIndex data into Python-friendly, ready-to-use dataframes☆11Mar 19, 2020Updated 5 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 3 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- A prettier index.html for listing public files and folders in Amazon S3 buckets.☆11Apr 4, 2016Updated 9 years ago
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Jan 28, 2026Updated 2 weeks ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated 7 months ago
- randomized SVD with single pass over data matrix☆10Apr 23, 2023Updated 2 years ago
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 5 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆14Jan 2, 2018Updated 8 years ago
- segmentation of spherical vesicles in cryo-electron tomography☆11Oct 25, 2024Updated last year
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated last year
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- Shiny UI for the NGLVieweR package☆11Nov 19, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Analysis workflow for investigating the structural context of PTMs☆11Jan 8, 2024Updated 2 years ago
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 8 years ago
- lightning☆11Oct 20, 2015Updated 10 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago