Taxonomic Classification of Bacteria and Archaea Genomes
☆19Aug 17, 2026Updated 2 months ago
Alternatives and similar repositories for barbet
Users that are interested in barbet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Vanjari is a tool for the classification of viruses using neural networks☆14Nov 21, 2025Updated 11 months ago
- ☆39Oct 22, 2026Updated last week
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Build phylogenomic datasets in seconds☆15Updated this week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Apr 26, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Jun 16, 2026Updated 4 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆49Jun 19, 2026Updated 4 months ago
- Official Repository for ZipStrain python package☆14Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- Workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.☆11Oct 7, 2026Updated 3 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Sep 1, 2026Updated last month
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- Distance-based Phylogenetic Placer☆25Sep 8, 2026Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆51Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow version of SNVPhyl☆12Oct 24, 2024Updated 2 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 30, 2026Updated 3 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- This is the webpage of the ESGEM-AMR Working Group☆16Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Aug 5, 2026Updated 2 months ago
- Fast DNA search and [host] depletion using minimizers☆128Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 2 weeks ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- Interpretative standards for AMR genotypes☆32Oct 8, 2026Updated 3 weeks ago
- ☆16Jun 21, 2023Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 3 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Oct 19, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- THRESHER is a framework that replaces fixed cutoffs with data-driven phylothresholds - the SNP thresholds corrected for phylogenetic topo…☆14Oct 17, 2026Updated last week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Updated this week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆40Aug 21, 2026Updated 2 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆112Oct 12, 2026Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆62Mar 26, 2026Updated 7 months ago