scwatts / hicapLinks
in silico typing of the H. influenzae cap locus
☆12Updated 10 months ago
Alternatives and similar repositories for hicap
Users that are interested in hicap are comparing it to the libraries listed below
Sorting:
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Recombination-free trees☆58Updated 2 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆28Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Split Kmer Analysis☆65Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- Plasmid analysis using rearrangement distances☆42Updated last week
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Extract subsets of ONT (Nanopore) reads based on time☆21Updated 8 months ago
- ☆36Updated 3 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- Calculate confidence scores from Kraken2 output☆22Updated last year
- Gene Absence Presence Identification tool.☆26Updated 2 months ago
- Code Safety Inspection Service☆20Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- Intra-species bacterial contamination detection☆25Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated 2 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year