scwatts / hicapLinks
in silico typing of the H. influenzae cap locus
☆12Updated last year
Alternatives and similar repositories for hicap
Users that are interested in hicap are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Plasmid exploration of bacterial genomes☆22Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Predict MLST directly from uncorrected long reads☆27Updated last month
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 7 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- SeqSero2☆39Updated 2 months ago
- emm Automatic Isolate Labeller☆12Updated 8 months ago
- Recombination-free trees☆62Updated 3 months ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Updated last year
- Calculate confidence scores from Kraken2 output☆23Updated last year
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆23Updated last year
- Archived - please see updated sccmec tool at link below☆13Updated last year
- Code Safety Inspection Service☆20Updated 3 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆34Updated 2 weeks ago
- ☆37Updated 3 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Order and orientation of complete bacterial genomes☆29Updated 5 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆40Updated 2 months ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago