saphir746 / BiobankRead-BashLinks
Python scripts to extract and pre-process UKB data
☆32Updated 6 years ago
Alternatives and similar repositories for BiobankRead-Bash
Users that are interested in BiobankRead-Bash are comparing it to the libraries listed below
Sorting:
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆50Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 4 years ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆24Updated 3 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 4 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆35Updated 6 months ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆39Updated 3 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆35Updated 2 years ago
- ☆31Updated 4 months ago
- Pipeline for processing UK biobank data☆14Updated 4 years ago
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆18Updated 11 months ago
- Prepare UK Biobank Electronic Health Record data for research☆26Updated 2 years ago
- Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch☆12Updated 3 years ago
- ⛑ Code for "Metabolomic profiles predict individual multi-disease outcomes" ⛑☆22Updated 2 years ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆26Updated last year
- Examples on using EpiGraphDB☆27Updated 4 years ago
- ☆82Updated last year
- ☆31Updated 7 months ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆98Updated 2 weeks ago
- MASI Lab Implementation of PheWAS in Python☆28Updated 6 months ago
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆13Updated 2 years ago
- ☆41Updated 4 months ago
- GREP: Genome for REPositioning drugs☆41Updated 2 years ago
- 🫀 Code for "Neural network-based integration of polygenic and clinical information: Development and validation of a prediction model for…☆12Updated 3 years ago
- An R package to manipulate and explore UK Biobank data☆105Updated 2 years ago
- Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…☆12Updated 5 years ago
- Code utilized in the paper "A phenome-wide association and Mendelian randomization study for Alzheimer's disease: a prospective cohort st…☆10Updated 2 years ago
- R package for UK Biobank data wrangling.☆20Updated last year
- Tofu is a Python tool for generating synthetic UK Biobank data.☆59Updated last year
- GWAS Summary Statistics for Brain Imaging Phenotypes☆20Updated 3 years ago