Alternatives and similar repositories for BiobankRead-Bash:

Users that are interested in BiobankRead-Bash are comparing it to the libraries listed below

• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆50Updated last year
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆35Updated 3 years ago
• PhilAppleby / ukbb-srmed
  Text matching UK Biobank Self-Reported medication descriptions for medication classification
  ☆23Updated 2 years ago
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆24Updated 4 years ago
• huw-morris-lab / ukbiobank
  Pipeline for processing UK biobank data
  ☆13Updated 4 years ago
• spiros / phemap
  Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
  ☆34Updated 2 years ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆38Updated 3 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• genomics-dev / ukb-pret
  ☆24Updated last month
• dnanexus-rnd / liftover_plink_beds
  Converting UK Biobank genome-wide genotyping data from one reference build to another
  ☆16Updated 8 months ago
• dnanexus / OpenBio
  ☆69Updated last year
• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆33Updated 3 months ago
• rmgpanw / ukbwranglr
  R package for UK Biobank data wrangling.
  ☆18Updated 10 months ago
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 4 months ago
• philipdarke / ukbb-ehr-data
  Prepare UK Biobank Electronic Health Record data for research
  ☆25Updated 2 years ago
• UK-Biobank / UKB-RAP-Notebooks-Access
  UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).
  ☆80Updated last month
• umich-cphds / createUKBphenome
  Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank
  ☆25Updated last year
• MRCIEU / epigraphdb
  Examples on using EpiGraphDB
  ☆27Updated 3 years ago
• jasonHKU0907 / DementiaProteomicPrediction
  ☆40Updated last month
• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆101Updated 2 years ago
• all-of-us / ukb-cross-analysis-demo-project
  Workbench demo project: cross-analysis of AoU and UKB.
  ☆11Updated last year
• NightingaleHealth / ukb-nightingale-biomarker-atlas
  Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".
  ☆13Updated 2 years ago
• BIG-S2 / GWAS
  GWAS Summary Statistics for Brain Imaging Phenotypes
  ☆19Updated 3 years ago
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆57Updated last year
• saorisakaue / GREP
  GREP: Genome for REPositioning drugs
  ☆40Updated 2 years ago
• philipdarke / ukbbhelpr
  Helper functions for UK Biobank data
  ☆12Updated 3 years ago
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆57Updated last year
• yeyixuan / UKBCaseFinder
  A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).
  ☆20Updated 6 years ago
• dnanexus / UKB_RAP
  Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…
  ☆158Updated 7 months ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆28Updated 3 years ago