Prepare UK Biobank Electronic Health Record data for research
☆30Aug 31, 2022Updated 3 years ago
Alternatives and similar repositories for ukbb-ehr-data
Users that are interested in ukbb-ehr-data are comparing it to the libraries listed below
Sorting:
- Helper functions for UK Biobank data☆12Dec 6, 2021Updated 4 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆26Feb 19, 2021Updated 5 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆39Nov 3, 2025Updated 4 months ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆27Apr 7, 2022Updated 3 years ago
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 3 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆39Dec 27, 2022Updated 3 years ago
- Medium Article☆11May 15, 2021Updated 4 years ago
- Workbench demo project: cross-analysis of AoU and UKB.☆14May 2, 2023Updated 2 years ago
- Prepare electronic medical record data from the UK Biobank for time-to-event analyses☆15Sep 10, 2025Updated 5 months ago
- An R package for generating analysis-ready data from laboratory records☆15Sep 1, 2023Updated 2 years ago
- ETL UK-Biobank☆16Nov 17, 2022Updated 3 years ago
- Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England☆19Mar 12, 2023Updated 2 years ago
- An ensemble of functions for use analysing the UKBB records on DNA Nexus☆15Nov 6, 2025Updated 3 months ago
- R package for UK Biobank data wrangling.☆21Apr 26, 2024Updated last year
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆25Oct 12, 2018Updated 7 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆59Mar 31, 2023Updated 2 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Feb 26, 2021Updated 5 years ago
- Highcharts meets Python in your jupyter notebook☆20Feb 13, 2025Updated last year
- Big Data Inventory Management on AWS (Demand Forecasting, Machine Learning, Dashboarding) : Presented at Carlson School of Management dur…☆11Apr 15, 2020Updated 5 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Jun 25, 2021Updated 4 years ago
- UKB Weekend Warrior MVPA Analysis☆11Apr 28, 2025Updated 10 months ago
- ☆18Sep 20, 2023Updated 2 years ago
- Extension to Python-Markdown to translate pydantic's model fields to markdown table☆12Apr 19, 2024Updated last year
- ☆11Apr 8, 2022Updated 3 years ago
- Collection of various biomedical data models in parseable formats.☆29Jan 5, 2026Updated last month
- The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)☆27Apr 16, 2021Updated 4 years ago
- MASI Lab Implementation of PheWAS in Python☆28Nov 12, 2024Updated last year
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆232Jul 30, 2024Updated last year
- ⚡️ Pandas dataframes with object oriented programming style (not maintained)☆11Mar 17, 2024Updated last year
- R Package for Data-Driven Antimicrobial Stewardship & Surveillance in Hospitals☆11May 11, 2024Updated last year
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆14Jan 10, 2021Updated 5 years ago
- Profit-driven demand forecasting with gradient boosted trees☆11Mar 28, 2023Updated 2 years ago
- A MkDocs plugin to add bootstrap classes to plan markdown generated tables.☆13Mar 27, 2020Updated 5 years ago
- Code utilized in the paper "A phenome-wide association and Mendelian randomization study for Alzheimer's disease: a prospective cohort st…☆12Jun 10, 2022Updated 3 years ago
- 帮助用户在python环境使用echarts 和 g2plot,highcharts,klinecharts,tabulator 等图表库☆29Sep 23, 2025Updated 5 months ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆51Jun 28, 2024Updated last year
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆34Sep 28, 2023Updated 2 years ago
- The Minimum Information About BIobank data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of minimal biobank-rel…☆25Feb 20, 2026Updated last week
- Demo of pointblank / projmgr / GitHub Actions / Slack workflow for data quality monitoring☆16Mar 29, 2023Updated 2 years ago