spiros / phemap
Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
☆29Updated last year
Related projects ⓘ
Alternatives and complementary repositories for phemap
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆23Updated 2 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 3 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 3 years ago
- Prepare UK Biobank Electronic Health Record data for research☆25Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆44Updated last year
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆27Updated this week
- An R package to manipulate and explore UK Biobank data☆96Updated last year
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆23Updated last year
- Python scripts to extract and pre-process UKB data☆30Updated 5 years ago
- Workbench demo project: cross-analysis of AoU and UKB.☆11Updated last year
- Helper functions for UK Biobank data☆13Updated 2 years ago
- Pipeline for processing UK biobank data☆12Updated 4 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆41Updated last month
- R package for UK Biobank data wrangling.☆16Updated 6 months ago
- ☆23Updated last month
- The PheWAS R package☆129Updated last month
- ☆28Updated last month
- R package for working in the UK Biobank Research Analysis Platform (RAP)☆33Updated 3 weeks ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆46Updated 4 months ago
- Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…☆12Updated 4 years ago
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆16Updated 6 years ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆133Updated 3 months ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆19Updated 3 years ago
- GWAS for survival analysis in large cohorts☆19Updated 4 months ago
- https://celehs.github.io/PheCAP/☆21Updated 3 years ago
- Bayesian multi-response Mendelian randomisation☆15Updated last year
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆27Updated 3 years ago