spiros / phemap
Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
☆32Updated 2 years ago
Alternatives and similar repositories for phemap:
Users that are interested in phemap are comparing it to the libraries listed below
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆23Updated 2 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 4 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- Prepare UK Biobank Electronic Health Record data for research☆26Updated 2 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 3 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆33Updated 2 months ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆48Updated last year
- R package for UK Biobank data wrangling.☆18Updated 9 months ago
- An R package to manipulate and explore UK Biobank data☆99Updated last year
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆25Updated last year
- Helper functions for UK Biobank data☆13Updated 3 years ago
- Code for multivariate genome wide association meta analysis☆20Updated 5 years ago
- Pipeline for processing UK biobank data☆13Updated 4 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆47Updated 7 months ago
- Software implementing the Latent Causal Variable Model☆63Updated 4 years ago
- ☆24Updated 3 weeks ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆19Updated 3 years ago
- Examples on using EpiGraphDB☆26Updated 3 years ago
- ☆30Updated 4 months ago
- Workbench demo project: cross-analysis of AoU and UKB.☆11Updated last year
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆12Updated 2 years ago
- Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…☆12Updated 4 years ago
- R package for epigraphdb☆27Updated 7 months ago
- Bayesian multi-response Mendelian randomisation☆16Updated 2 years ago
- R package for working in the UK Biobank Research Analysis Platform (RAP)☆48Updated last week
- Python scripts to extract and pre-process UKB data☆30Updated 5 years ago
- The PheWAS R package☆138Updated 2 months ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆57Updated last year
- Fine-tuning polygenic risk score models using GWAS summary statistics☆47Updated 2 months ago