Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
☆34Feb 19, 2021Updated 5 years ago
Alternatives and similar repositories for ukb-biomarker-phenotypes
Users that are interested in ukb-biomarker-phenotypes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Prepare UK Biobank Electronic Health Record data for research☆32Aug 31, 2022Updated 3 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆63Mar 31, 2023Updated 3 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆39Dec 27, 2022Updated 3 years ago
- Code utilized in the paper "A phenome-wide association and Mendelian randomization study for Alzheimer's disease: a prospective cohort st…☆14Jun 10, 2022Updated 4 years ago
- An ensemble of functions for use analysing the UKBB records on DNA Nexus☆15Apr 22, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆41Nov 3, 2025Updated 8 months ago
- Helper functions for UK Biobank data☆13Dec 6, 2021Updated 4 years ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆36Apr 27, 2026Updated 3 months ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆73Jul 25, 2023Updated 3 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆66Jul 7, 2026Updated 3 weeks ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆259Jul 30, 2024Updated last year
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆21Feb 26, 2021Updated 5 years ago
- ☆16Updated this week
- GWAS for survival analysis in large cohorts☆24Jul 24, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- UKB Weekend Warrior MVPA Analysis☆13Apr 28, 2025Updated last year
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆53Jun 28, 2024Updated 2 years ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆44Jul 12, 2021Updated 5 years ago
- R package for UK Biobank data wrangling.☆22Apr 26, 2024Updated 2 years ago
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆14Jul 11, 2024Updated 2 years ago
- R package for working in the UK Biobank Research Analysis Platform (RAP)☆92Mar 13, 2026Updated 4 months ago
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 4 years ago
- Generating polygenic risk scores in UK Biobank (University of Bristol)☆16Aug 14, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Apr 8, 2022Updated 4 years ago
- Identifying relevant concepts from the OMOP CDM vocabularies☆18Jan 19, 2026Updated 6 months ago
- Medium Article☆11May 15, 2021Updated 5 years ago
- The UKB Git Audit Tool is a utility designed to audit Git repositories for potential public exposure of UK Biobank data. It performs a co…☆17Apr 30, 2026Updated 2 months ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆172Feb 19, 2026Updated 5 months ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆167Oct 22, 2025Updated 9 months ago
- Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England☆18Jun 22, 2026Updated last month
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- An online clinical codes repository to improve validity and reproducability of medical database research☆22Mar 9, 2015Updated 11 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆22Jul 4, 2022Updated 4 years ago
- Doubly-Ranked Stratification in Mendelian Randomization☆11Jan 10, 2026Updated 6 months ago
- An R package for generating analysis-ready data from laboratory records☆16Sep 1, 2023Updated 2 years ago
- Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and C…☆11Updated this week
- Hidden Markov Model (HMM) for Sleep/Wake Identification using Actigraphy☆11Jun 21, 2022Updated 4 years ago
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆28Oct 12, 2018Updated 7 years ago
- ETL UK-Biobank☆18Nov 17, 2022Updated 3 years ago