Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
☆34Feb 19, 2021Updated 5 years ago
Alternatives and similar repositories for ukb-biomarker-phenotypes
Users that are interested in ukb-biomarker-phenotypes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Prepare UK Biobank Electronic Health Record data for research☆32Aug 31, 2022Updated 4 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆63Mar 31, 2023Updated 3 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆38Dec 27, 2022Updated 3 years ago
- R package for UK Biobank data wrangling.☆22Apr 26, 2024Updated 2 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆21Feb 26, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Helper functions for UK Biobank data☆13Dec 6, 2021Updated 4 years ago
- Code utilized in the paper "A phenome-wide association and Mendelian randomization study for Alzheimer's disease: a prospective cohort st…☆14Jun 10, 2022Updated 4 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆41Nov 3, 2025Updated last year
- Prepare electronic medical record data from the UK Biobank for time-to-event analyses☆16Sep 10, 2025Updated last year
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆36Apr 27, 2026Updated 6 months ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆28Apr 7, 2022Updated 4 years ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆73Jul 25, 2023Updated 3 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆66Jul 7, 2026Updated 3 months ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆259Jul 30, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- UKB Weekend Warrior MVPA Analysis☆13Apr 28, 2025Updated last year
- GWAS for survival analysis in large cohorts☆26Jul 24, 2024Updated 2 years ago
- WDL pipelines for running regenie☆12Oct 9, 2026Updated 3 weeks ago
- Data management helper code for the UK Biobank.☆11Sep 16, 2022Updated 4 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆53Jun 28, 2024Updated 2 years ago
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆14Jul 11, 2024Updated 2 years ago
- R package for working in the UK Biobank Research Analysis Platform (RAP)☆95Mar 13, 2026Updated 7 months ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆45Jul 12, 2021Updated 5 years ago
- Medium Article☆11May 15, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 4 years ago
- Generating polygenic risk scores in UK Biobank (University of Bristol)☆16Aug 14, 2020Updated 6 years ago
- Notes and code for running UK Biobank GWAS at the MRC IEU☆19Jul 18, 2024Updated 2 years ago
- This is an R package to retrieve data from Open Target☆15Updated this week
- Identifying relevant concepts from the OMOP CDM vocabularies☆18Aug 1, 2026Updated 3 months ago
- ☆11Apr 8, 2022Updated 4 years ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆172Feb 19, 2026Updated 8 months ago
- An online clinical codes repository to improve validity and reproducability of medical database research☆22Mar 9, 2015Updated 11 years ago
- The UKB Git Audit Tool is a utility designed to audit Git repositories for potential public exposure of UK Biobank data. It performs a co…☆19Apr 30, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package for generating analysis-ready data from laboratory records☆16Sep 1, 2023Updated 3 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆21Jul 4, 2022Updated 4 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆168Oct 22, 2025Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Extension to Python-Markdown to translate pydantic's model fields to markdown table☆13Apr 19, 2024Updated 2 years ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 4 years ago
- Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England☆18Jun 22, 2026Updated 4 months ago