Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
☆33Feb 19, 2021Updated 5 years ago
Alternatives and similar repositories for ukb-biomarker-phenotypes
Users that are interested in ukb-biomarker-phenotypes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Prepare UK Biobank Electronic Health Record data for research☆32Aug 31, 2022Updated 3 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆63Mar 31, 2023Updated 3 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆39Dec 27, 2022Updated 3 years ago
- Helper functions for UK Biobank data☆13Dec 6, 2021Updated 4 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆41Nov 3, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code utilized in the paper "A phenome-wide association and Mendelian randomization study for Alzheimer's disease: a prospective cohort st…☆14Jun 10, 2022Updated 4 years ago
- Prepare electronic medical record data from the UK Biobank for time-to-event analyses☆16Sep 10, 2025Updated 9 months ago
- An ensemble of functions for use analysing the UKBB records on DNA Nexus☆15Apr 22, 2026Updated last month
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆27Apr 7, 2022Updated 4 years ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆36Apr 27, 2026Updated last month
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆21Feb 26, 2021Updated 5 years ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- An online clinical codes repository to improve validity and reproducability of medical database research☆22Mar 9, 2015Updated 11 years ago
- UKB Weekend Warrior MVPA Analysis☆13Apr 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tofu is a Python tool for generating synthetic UK Biobank data.☆71Jul 25, 2023Updated 2 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆65Apr 13, 2026Updated 2 months ago
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 4 years ago
- R package for UK Biobank data wrangling.☆22Apr 26, 2024Updated 2 years ago
- ☆11Apr 8, 2022Updated 4 years ago
- Medium Article☆11May 15, 2021Updated 5 years ago
- GWAS for survival analysis in large cohorts☆24Jul 24, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆259Jul 30, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England☆18Mar 12, 2023Updated 3 years ago
- An R package for generating analysis-ready data from laboratory records☆16Sep 1, 2023Updated 2 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆22Jul 4, 2022Updated 3 years ago
- ETL UK-Biobank☆18Nov 17, 2022Updated 3 years ago
- A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).☆28Oct 12, 2018Updated 7 years ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- A MkDocs plugin to add bootstrap classes to plan markdown generated tables.☆13Mar 27, 2020Updated 6 years ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆44Jul 12, 2021Updated 4 years ago
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆25Jun 20, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆17Jun 28, 2023Updated 2 years ago
- Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and C…☆11Jun 9, 2026Updated last week
- View a list of JSON-serializable dictionaries or a 2-D array, in HandsOnTable, in Jupyter Notebook.☆13Oct 11, 2018Updated 7 years ago
- Dementia (Alzheimer's Disease) Risk Prediction Tool based on UK Biobank☆28Dec 30, 2024Updated last year
- Vector Approximate Message Passing inference framework for GWAS☆20Updated this week
- ☆16Updated this week
- Hidden Markov Model (HMM) for Sleep/Wake Identification using Actigraphy☆11Jun 21, 2022Updated 3 years ago