saphetor / varsome-api-client-pythonLinks
Example client programs for Saphetor's VarSome annotation API
☆36Updated 3 months ago
Alternatives and similar repositories for varsome-api-client-python
Users that are interested in varsome-api-client-python are comparing it to the libraries listed below
Sorting:
- The nimble & robust variant annotator☆188Updated last year
- C++ Library to parse Illumina InterOp files☆80Updated 2 weeks ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 3 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 6 months ago
- ABRA2☆95Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆200Updated last week
- a Medical Genetics Sequence Analysis Pipeline☆84Updated last week
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆144Updated 5 months ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- CNV screening and annotation tool☆25Updated 9 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆77Updated 2 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated last week
- Phenotype driven gene prioritization for HPO☆51Updated 4 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆174Updated last year
- ☆82Updated 7 years ago
- A tool set for short variant discovery in genetic sequence data.☆203Updated 4 years ago
- VarDict Java port☆137Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆69Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- HGVS variant name parsing and generation☆176Updated 2 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Updated last year
- Platypus Variant Caller☆108Updated last year
- Software program for checking sample matching for NGS data☆137Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago