samtools / htscodecs
Custom compression for CRAM and others.
☆31Updated 2 months ago
Alternatives and similar repositories for htscodecs:
Users that are interested in htscodecs are comparing it to the libraries listed below
- Compressing next-generation sequencing data with extreme prejudice.☆80Updated 2 years ago
- Fastq compression tool☆14Updated 5 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- Parallel Block GZIP☆50Updated 8 years ago
- VBZ compression plugin for nanopore signal data☆39Updated last month
- A compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated 4 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 8 months ago
- Fastq compression☆17Updated 5 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆31Updated 2 months ago
- A tool for merging large BWTs☆26Updated 4 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induce…☆198Updated last month
- Truly parallel gzip decompression☆125Updated 5 years ago
- Library for the Handle Graph abstraction☆23Updated 2 months ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆27Updated 4 years ago
- BWT-based index for graphs☆70Updated 3 months ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated 11 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆36Updated last year
- A repository for generating strobemers and evalaution☆77Updated 10 months ago
- Efficient, parallel compression for terabyte-scale data☆39Updated last month
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- rANS coder (derived from https://github.com/rygorous/ryg_rans)☆83Updated 2 years ago
- Substring index for paths in a graph☆59Updated 2 weeks ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated 11 months ago
- Self-contained, multi-threaded fasta/q parser☆43Updated 4 months ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆32Updated 4 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆47Updated 11 months ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Generic hash table library in C☆28Updated last month