Alternatives and similar repositories for htscodecs

Users that are interested in htscodecs are comparing it to the libraries listed below

• Piezoid / pugz
  Truly parallel gzip decompression
  ☆124Updated 6 years ago
• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 9 years ago
• jermp / sshash
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆89Updated this week
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆83Updated last year
• shubhamchandak94 / HARC
  Fastq compression
  ☆18Updated 5 years ago
• IlyaGrebnov / libsais
  The libsais library provides fast linear-time construction of suffix array (SA), generalized suffix array (GSA), longest common prefix (L…
  ☆220Updated 3 weeks ago
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆39Updated last year
• dcjones / quip
  Compressing next-generation sequencing data with extreme prejudice.
  ☆83Updated 3 years ago
• jkbonfield / fqzcomp
  Fastq compression tool
  ☆16Updated 5 years ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆53Updated last year
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• lh3 / cgranges
  A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
  ☆168Updated last year
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆20Updated 3 months ago
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆34Updated 9 months ago
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 3 years ago
• dcjones / coitrees
  A very fast interval tree data structure
  ☆125Updated 7 months ago
• felipelouza / gsufsort
  gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
  ☆28Updated 7 months ago
• BilkentCompGen / mrfast
  micro-read Fast Alignment Search Tool
  ☆19Updated 6 years ago
• attractivechaos / khashl
  Generic hash table library in C
  ☆35Updated 4 months ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆48Updated this week
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆16Updated 4 years ago
• bcgsc / ntHash
  Fast hash function for DNA/RNA sequences
  ☆104Updated last year
• kloetzl / libdna
  ♥ Essential Functions for DNA Manipulation
  ☆20Updated 3 months ago
• albertozeni / LOGAN
  LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.
  ☆29Updated 3 years ago
• Daniel-Liu-c0deb0t / UMICollapse
  Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…
  ☆79Updated last year
• CMU-SAFARI / BLEND
  BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…
  ☆43Updated 2 years ago
• jkbonfield / io_lib
  Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…
  ☆36Updated 2 months ago
• shubhamchandak94 / Spring
  FASTQ compression
  ☆131Updated 2 years ago
• jlabeit / parallel-divsufsort
  Parallel Lightweight Suffix Array Algorithm.
  ☆17Updated 8 years ago
• IlyaGrebnov / libbsc
  High performance block-sorting data compression library
  ☆328Updated 3 weeks ago