Alternatives and similar repositories for htscodecs

Users that are interested in htscodecs are comparing it to the libraries listed below

• Piezoid / pugz
  Truly parallel gzip decompression
  ☆124Updated 6 years ago
• IlyaGrebnov / libsais
  The libsais library provides fast linear-time construction of suffix array (SA), generalized suffix array (GSA), longest common prefix (L…
  ☆232Updated 3 months ago
• jermp / sshash
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆90Updated this week
• jkbonfield / fqzcomp
  Fastq compression tool
  ☆17Updated 6 years ago
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆88Updated last year
• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 9 years ago
• shubhamchandak94 / HARC
  Fastq compression
  ☆18Updated 6 years ago
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆36Updated last year
• dcjones / quip
  Compressing next-generation sequencing data with extreme prejudice.
  ☆83Updated 3 years ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆56Updated last year
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated 2 years ago
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆25Updated 2 months ago
• muellan / metacache
  memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
  ☆64Updated 6 months ago
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆39Updated last year
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆55Updated 2 months ago
• shubhamchandak94 / Spring
  FASTQ compression
  ☆141Updated 2 years ago
• felipelouza / gsufsort
  gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
  ☆27Updated 10 months ago
• davidecenzato / PFP-eBWT
  Implementation of eBWT using Prefix-free parse (PFP)
  ☆14Updated 5 months ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆20Updated 6 months ago
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆83Updated last year
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• IlyaGrebnov / esa-matchfinder
  The esa-matchfinder is a C99 library for efficient Lempel-Ziv factorization using enhanced suffix array (ESA).
  ☆28Updated 3 months ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• attractivechaos / khashl
  Generic hash table library in C
  ☆36Updated 7 months ago
• albertozeni / LOGAN
  LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.
  ☆29Updated 3 years ago
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆66Updated 2 years ago
• refresh-bio / fqsqueezer
  FQSqueezer - FASTQ compressor based on k-mer statistics
  ☆17Updated last year
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆11Updated 7 years ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆25Updated 5 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago