Alternatives and similar repositories for HD-BET:

Users that are interested in HD-BET are comparing it to the libraries listed below

• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python
  ☆215Updated last week
• BBillot / SynthSeg
  Contrast-agnostic segmentation of MRI scans
  ☆440Updated 9 months ago
• icometrix / dicom2nifti
  ☆359Updated last week
• quqixun / BrainPrep
  Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhanceme…
  ☆203Updated 6 years ago
• jcreinhold / intensity-normalization
  normalize the intensities of various MR image modalities
  ☆324Updated 3 months ago
• BBillot / SynthSR
  A framework for joint super-resolution and image synthesis, without requiring real training data
  ☆160Updated last year
• iitzco / deepbrain
  Deep Learning tools for brain medical images
  ☆140Updated 9 months ago
• ENHANCE-PET / MOOSE
  MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemi…
  ☆238Updated last week
• ha-ha-ha-han / UKBiobank_deep_pretrain
  Pretrained neural networks for UK Biobank brain MRI images. SFCN, 3D-ResNet etc.
  ☆150Updated 7 months ago
• ANTsX / ANTsPy
  A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
  ☆708Updated this week
• Jfortin1 / ComBatHarmonization
  Harmonization of multi-site imaging data with ComBat
  ☆289Updated last year
• fitushar / 3D-Medical-Imaging-Preprocessing-All-you-need
  This Repo Will contain the Preprocessing Code for 3D Medical Imaging
  ☆199Updated 4 years ago
• Angeluz-07 / MRI-preprocessing-techniques
  Code examples of the free course in Youtube of brain MRI preprocessing techniques in python
  ☆65Updated 4 months ago
• kondratevakate / mri-deep-learning-tools
  Resurces for MRI images processing and deep learning in 3D
  ☆136Updated 3 years ago
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆239Updated last year
• qurit / rt-utils
  A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
  ☆230Updated last month
• Jingnan-Jia / segmentation_metrics
  A package to compute medical segmentation metrics.
  ☆159Updated 9 months ago
• gift-surg / NiftyMIC
  NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.
  ☆147Updated 3 years ago
• MASILab / SLANTbrainSeg
  Deep Whole Brain Segmentation Using SLANT Method
  ☆118Updated last year
• MIDIconsortium / BrainAge
  ☆33Updated 9 months ago
• NrgXnat / oasis-scripts
  Example download scripts for the OASIS3 project
  ☆146Updated 3 months ago
• aramis-lab / clinicadl
  Framework for the reproducible processing of neuroimaging data with deep learning methods
  ☆167Updated 2 weeks ago
• pyplati / platipy
  Processing Library and Analysis Toolkit for Medical Imaging in Python
  ☆132Updated 2 weeks ago
• neuronflow / BraTS-Toolkit
  Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
  ☆86Updated 7 months ago
• Jfortin1 / neuroCombat
  Harmonization of multi-site imaging data with ComBat (Python)
  ☆133Updated 2 years ago
• CompImg / LST-AI
  LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation
  ☆32Updated last month
• FrancescoLR / MS-lesion-segmentation
  ☆10Updated 3 years ago
• StanfordMIMI / Comp2Comp
  Computed tomography to body composition (Comp2Comp).
  ☆79Updated 2 weeks ago
• Slicer / SlicerLungCTAnalyzer
  This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.
  ☆77Updated 7 months ago
• Sikerdebaard / dcmrtstruct2nii
  DICOM RT-Struct to mask
  ☆101Updated last year