MRI brain extraction tool
☆416Dec 18, 2024Updated last year
Alternatives and similar repositories for HD-BET
Users that are interested in HD-BET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Contrast-agnostic segmentation of MRI scans☆558Jul 17, 2024Updated last year
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆254Updated this week
- Normalize MR image intensities in Python☆342Jul 21, 2025Updated 10 months ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆40Jul 14, 2021Updated 4 years ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆38Mar 21, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆866May 12, 2026Updated last week
- Automated deep-learning based brain tumor segmentation on MRI☆40Aug 24, 2022Updated 3 years ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,155Updated this week
- Advanced Normalization Tools (ANTs)☆1,463Updated this week
- Automatic White Matter Bundle Segmentation☆262Feb 23, 2026Updated 3 months ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆164Updated this week
- PyTorch implementation of FastSurferCNN☆603Updated this week
- Automated deep learning based segmentation of multiple sclerosis lesions on MRI☆15Sep 6, 2022Updated 3 years ago
- ☆12Nov 23, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Brain Extraction Tool in Python☆45May 13, 2026Updated last week
- A workflow to allow Freesurfer recon-all to run on brain image with gliomas☆32Jun 17, 2024Updated last year
- Unified super-resolution and denoising of medical images in PyTorch☆90Dec 22, 2025Updated 5 months ago
- Full head segmentation☆43Updated this week
- 3D Slicer extension for accessing HD-BET brain extraction tool for skull stripping in brain MRI images.☆27Jan 20, 2025Updated last year
- ☆8,448May 18, 2026Updated last week
- Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhanceme…☆210May 15, 2018Updated 8 years ago
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆198Updated this week
- A framework for data augmentation for 2D and 3D image classification and segmentation☆1,174May 12, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)☆34Jun 5, 2022Updated 3 years ago
- Neuroimaging analysis and visualization suite☆834Updated this week
- ☆400Jun 23, 2025Updated 11 months ago
- Deep Learning tools for brain medical images☆143Jul 27, 2024Updated last year
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆18May 22, 2024Updated 2 years ago
- ☆46Jul 28, 2024Updated last year
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆106Sep 23, 2025Updated 8 months ago
- Medical imaging processing for AI applications.☆2,394May 6, 2026Updated 2 weeks ago
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆74Jun 28, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains the code used for the paper "Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and …☆39Feb 14, 2023Updated 3 years ago
- Fast brain extraction using neural networks☆51Jul 23, 2024Updated last year
- Library to compute surface distance based performance metrics for segmentation tasks.☆597Feb 19, 2025Updated last year
- A framework for joint super-resolution and image synthesis, without requiring real training data☆187Mar 29, 2024Updated 2 years ago
- Tool for robust segmentation of >100 important anatomical structures in CT and MR images☆2,708Updated this week
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆112Updated this week
- ☆32Apr 8, 2026Updated last month