Alternatives and similar repositories for HD-BET:

Users that are interested in HD-BET are comparing it to the libraries listed below

• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python
  ☆214Updated 3 weeks ago
• BBillot / SynthSeg
  Contrast-agnostic segmentation of MRI scans
  ☆434Updated 8 months ago
• jcreinhold / intensity-normalization
  normalize the intensities of various MR image modalities
  ☆325Updated 2 months ago
• icometrix / dicom2nifti
  ☆358Updated 2 weeks ago
• BBillot / SynthSR
  A framework for joint super-resolution and image synthesis, without requiring real training data
  ☆158Updated last year
• ENHANCE-PET / MOOSE
  MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemi…
  ☆233Updated 3 weeks ago
• quqixun / BrainPrep
  Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhanceme…
  ☆203Updated 6 years ago
• qurit / rt-utils
  A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
  ☆227Updated 3 weeks ago
• Angeluz-07 / MRI-preprocessing-techniques
  Code examples of the free course in Youtube of brain MRI preprocessing techniques in python
  ☆64Updated 3 months ago
• kondratevakate / mri-deep-learning-tools
  Resurces for MRI images processing and deep learning in 3D
  ☆136Updated 2 years ago
• ANTsX / ANTsPy
  A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
  ☆699Updated 2 weeks ago
• gift-surg / NiftyMIC
  NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.
  ☆147Updated 3 years ago
• iitzco / deepbrain
  Deep Learning tools for brain medical images
  ☆138Updated 8 months ago
• pyplati / platipy
  Processing Library and Analysis Toolkit for Medical Imaging in Python
  ☆128Updated 3 weeks ago
• Sikerdebaard / dcmrtstruct2nii
  DICOM RT-Struct to mask
  ☆101Updated last year
• InsightSoftwareConsortium / ITKElastix
  An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
  ☆232Updated last week
• Jfortin1 / ComBatHarmonization
  Harmonization of multi-site imaging data with ComBat
  ☆284Updated last year
• neuronflow / BraTS-Toolkit
  Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
  ☆87Updated 6 months ago
• Jingnan-Jia / segmentation_metrics
  A package to compute medical segmentation metrics.
  ☆156Updated 9 months ago
• fitushar / 3D-Medical-Imaging-Preprocessing-All-you-need
  This Repo Will contain the Preprocessing Code for 3D Medical Imaging
  ☆199Updated 4 years ago
• vanandrew / brainextractor
  A re-implementation of FSL's Brain Extraction Tool in Python
  ☆40Updated 3 weeks ago
• davidiommi / 3D-CycleGan-Pytorch-MedImaging
  Pytorch pipeline for 3D image domain translation using Cycle-Generative-Adversarial-networks, without paired examples.
  ☆156Updated 3 years ago
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆238Updated last year
• ha-ha-ha-han / UKBiobank_deep_pretrain
  Pretrained neural networks for UK Biobank brain MRI images. SFCN, 3D-ResNet etc.
  ☆150Updated 6 months ago
• Jfortin1 / neuroCombat
  Harmonization of multi-site imaging data with ComBat (Python)
  ☆133Updated last year
• MASILab / SLANTbrainSeg
  Deep Whole Brain Segmentation Using SLANT Method
  ☆118Updated last year
• SimpleITK / TUTORIAL
  ☆109Updated 2 months ago
• CBICA / CaPTk
  Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: h…
  ☆186Updated last year
• MIDIconsortium / BrainAge
  ☆33Updated 8 months ago
• MStarmans91 / WORC
  Workflow for Optimal Radiomics Classification
  ☆74Updated last month