Python package to access a cacophony of neuro-imaging file formats
☆771Apr 8, 2026Updated this week
Alternatives and similar repositories for nibabel
Users that are interested in nibabel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows and interfaces for neuroimaging packages☆825Mar 30, 2026Updated 2 weeks ago
- Machine learning for NeuroImaging in Python☆1,384Apr 7, 2026Updated last week
- Neuroimaging in Python FMRI analysis package☆409Dec 24, 2024Updated last year
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆850Mar 11, 2026Updated last month
- DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, mach…☆816Updated this week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Neuroimaging analysis and visualization suite☆817Updated this week
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆725Apr 7, 2026Updated last week
- Advanced Normalization Tools (ANTs)☆1,453Updated this week
- Flexible DICOM conversion into structured directory layouts☆276Mar 30, 2026Updated 2 weeks ago
- Python tools for querying and manipulating BIDS datasets.☆258Apr 6, 2026Updated last week
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,137Nov 4, 2025Updated 5 months ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆109Apr 6, 2026Updated last week
- Cortical neuroimaging visualization in Python☆253Dec 15, 2023Updated 2 years ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Feb 14, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Official AFNI source and documentation☆185Updated this week
- Read, modify and write DICOM files with python code☆2,153Updated this week
- ☆397Jun 23, 2025Updated 9 months ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆44Apr 6, 2026Updated last week
- SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, educati…☆1,052Updated this week
- Neuroimaging widgets for jupyter notebooks☆87Dec 8, 2022Updated 3 years ago
- Timeseries analysis for neuroscience data☆257Apr 1, 2026Updated last week
- DICOM to Nifti conversion with meta data preservation☆78Mar 24, 2026Updated 3 weeks ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆162Apr 6, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Processing pipelines for the HCP☆639Updated this week
- Automated anatomical brain label/shape analysis software (+ website)☆154Apr 8, 2021Updated 5 years ago
- Brain Imaging Data Structure (BIDS) Specification☆352Apr 6, 2026Updated last week
- A neuroscience library for Python, intended to complement the existing nibabel library.☆131Oct 14, 2025Updated 6 months ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆351Jan 28, 2026Updated 2 months ago
- Pycortex is a python-based toolkit for surface visualization of fMRI data☆654Updated this week
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆13Feb 18, 2026Updated last month
- Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data☆24May 12, 2025Updated 11 months ago
- Brain Imaging Analysis Kit☆370Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆219Apr 2, 2026Updated last week
- Preprocessing of diffusion MRI☆179Updated this week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆195Mar 6, 2026Updated last month
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆251Mar 30, 2026Updated 2 weeks ago
- Generate custom Docker and Singularity images, and minimize existing containers☆355Mar 24, 2026Updated 3 weeks ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆345Updated this week
- v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.☆274Nov 23, 2025Updated 4 months ago