Python package to access a cacophony of neuro-imaging file formats
☆781Jul 21, 2026Updated this week
Alternatives and similar repositories for nibabel
Users that are interested in nibabel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows and interfaces for neuroimaging packages☆832Updated this week
- Machine learning for NeuroImaging in Python☆1,420Updated this week
- Neuroimaging in Python FMRI analysis package☆414Dec 24, 2024Updated last year
- DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, mach…☆831Updated this week
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆879Jul 9, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Neuroimaging analysis and visualization suite☆862Updated this week
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆741Jul 6, 2026Updated 2 weeks ago
- Advanced Normalization Tools (ANTs)☆1,490Updated this week
- Flexible DICOM conversion into structured directory layouts☆283Updated this week
- Python tools for querying and manipulating BIDS datasets.☆261Updated this week
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,174Jul 15, 2026Updated last week
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆115Updated this week
- Cortical neuroimaging visualization in Python☆254Dec 15, 2023Updated 2 years ago
- Official AFNI source and documentation☆191Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆77Feb 14, 2026Updated 5 months ago
- Read, modify and write DICOM files with python code☆2,191Jul 6, 2026Updated 2 weeks ago
- ☆401Jun 23, 2025Updated last year
- SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, educati…☆1,078Updated this week
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆45Updated this week
- Neuroimaging widgets for jupyter notebooks☆86Dec 8, 2022Updated 3 years ago
- DICOM to Nifti conversion with meta data preservation☆78Mar 24, 2026Updated 4 months ago
- Timeseries analysis for neuroscience data☆261Jul 1, 2026Updated 3 weeks ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆165Jul 6, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Processing pipelines for the HCP☆649Updated this week
- Automated anatomical brain label/shape analysis software (+ website)☆154Apr 8, 2021Updated 5 years ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆369Updated this week
- A neuroscience library for Python, intended to complement the existing nibabel library.☆134Oct 14, 2025Updated 9 months ago
- Brain Imaging Data Structure (BIDS) Specification☆364Updated this week
- Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data☆24May 12, 2025Updated last year
- a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.☆473Jul 8, 2026Updated 2 weeks ago
- Pycortex is a python-based toolkit for surface visualization of fMRI data☆663Updated this week
- Brain Imaging Analysis Kit☆375Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆222Updated this week
- Preprocessing of diffusion MRI☆185Jul 14, 2026Updated last week
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆14Feb 18, 2026Updated 5 months ago
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆204Jul 9, 2026Updated 2 weeks ago
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆258Updated this week
- Generate custom Docker and Singularity images, and minimize existing containers☆359Jul 1, 2026Updated 3 weeks ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆352Updated this week