nipy / nibabel
Python package to access a cacophony of neuro-imaging file formats
☆681Updated 2 weeks ago
Alternatives and similar repositories for nibabel:
Users that are interested in nibabel are comparing it to the libraries listed below
- Workflows and interfaces for neuroimaging packages☆763Updated this week
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆678Updated this week
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆932Updated this week
- DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, mach…☆738Updated last week
- ☆354Updated 2 months ago
- Neuroimaging in Python FMRI analysis package☆386Updated 2 months ago
- Neuroimaging analysis and visualization suite☆645Updated this week
- Pre-trained models and utilities for deep learning on medical images in Python☆209Updated last week
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆312Updated 3 weeks ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆302Updated last week
- Contrast-agnostic segmentation of MRI scans☆414Updated 7 months ago
- Automatic White Matter Bundle Segmentation☆234Updated last year
- Multi-lingual medical image registration library☆518Updated last year
- Flexible DICOM conversion into structured directory layouts☆246Updated last week
- Software platform for clinical neuroimaging studies☆239Updated this week
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆652Updated this week
- Processing pipelines for the HCP☆558Updated this week
- Jupyter notebooks for learning how to use SimpleITK☆854Updated last month
- MRI brain extraction tool☆317Updated 2 months ago
- PyTorch implementation of FastSurferCNN☆490Updated this week
- dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representa…☆252Updated this week
- Advanced Normalization Tools (ANTs)☆1,261Updated this week
- Official elastix repository☆507Updated this week
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆172Updated last month
- Harmonization of multi-site imaging data with ComBat☆279Updated last year
- Framework for the reproducible processing of neuroimaging data with deep learning methods☆167Updated last week
- 3D convolutional neural network for MRI brain extraction☆121Updated 3 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆227Updated this week
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆137Updated last week
- Deep Learning tools for brain medical images☆137Updated 7 months ago