Python package to access a cacophony of neuro-imaging file formats
☆790Sep 1, 2026Updated this week
Alternatives and similar repositories for nibabel
Users that are interested in nibabel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows and interfaces for neuroimaging packages☆834Aug 25, 2026Updated last week
- Machine learning for NeuroImaging in Python☆1,427Updated this week
- Neuroimaging in Python FMRI analysis package☆414Dec 24, 2024Updated last year
- DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, mach…☆837Updated this week
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆881Aug 19, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Neuroimaging analysis and visualization suite☆868Updated this week
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆747Updated this week
- Advanced Normalization Tools (ANTs)☆1,497Updated this week
- Flexible DICOM conversion into structured directory layouts☆283Updated this week
- Python tools for querying and manipulating BIDS datasets.☆265Updated this week
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,184Aug 25, 2026Updated last week
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆117Aug 25, 2026Updated last week
- Cortical neuroimaging visualization in Python☆253Dec 15, 2023Updated 2 years ago
- Official AFNI source and documentation☆196Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆77Feb 14, 2026Updated 6 months ago
- Read, modify and write DICOM files with python code☆2,203Updated this week
- ☆403Jun 23, 2025Updated last year
- SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, educati…☆1,084Updated this week
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆45Updated this week
- Neuroimaging widgets for jupyter notebooks☆85Dec 8, 2022Updated 3 years ago
- DICOM to Nifti conversion with meta data preservation☆78Mar 24, 2026Updated 5 months ago
- Timeseries analysis for neuroscience data☆261Updated this week
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆164Aug 25, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Processing pipelines for the HCP☆651Updated this week
- Automated anatomical brain label/shape analysis software (+ website)☆155Aug 24, 2026Updated last week
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆371Jul 20, 2026Updated last month
- A neuroscience library for Python, intended to complement the existing nibabel library.☆134Oct 14, 2025Updated 10 months ago
- Brain Imaging Data Structure (BIDS) Specification☆366Updated this week
- Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data☆24May 12, 2025Updated last year
- a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.☆485Aug 18, 2026Updated 2 weeks ago
- Pycortex is a python-based toolkit for surface visualization of fMRI data☆664Updated this week
- Brain Imaging Analysis Kit☆372Aug 7, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.☆224Updated this week
- Preprocessing of diffusion MRI☆187Updated this week
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆14Feb 18, 2026Updated 6 months ago
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆205Aug 9, 2026Updated 3 weeks ago
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆261Aug 23, 2026Updated last week
- Generate custom Docker and Singularity images, and minimize existing containers☆361Updated this week
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆353Aug 25, 2026Updated last week