Alternatives and similar repositories for bidskit:

Users that are interested in bidskit are comparing it to the libraries listed below

• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆41Updated 6 months ago
• templateflow / templateflow
  The TemplateFlow Archive - A DataLad super-dataset
  ☆78Updated this week
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆35Updated 2 months ago
• PennLINC / xcpEngine
  Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
  ☆64Updated 2 years ago
• ReproNim / reproin
  A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
  ☆49Updated 2 weeks ago
• arielletambini / denoiser
  Nuisance removal tool for fMRI data
  ☆56Updated last year
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆38Updated 2 years ago
• bids-apps / HCPPipelines
  A BIDS App for minimal preprocessing using the HCP Pipelines
  ☆35Updated 6 months ago
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆64Updated 5 months ago
• MidnightScanClub / MSCcodebase
  The Midnight Scanning Club Codebase
  ☆33Updated 5 years ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 4 months ago
• preprocessed-connectomes-project / quality-assessment-protocol
  Scripts and documentation for the PCP's protocol for assessing data quality.
  ☆40Updated 3 years ago
• yetianmed / subcortex
  ☆115Updated 3 weeks ago
• CMRR-C2P / MB
  Support for CMRR multi-band pulse sequences
  ☆58Updated 2 months ago
• Washington-University / cifti-matlab
  MATLAB code for reading and writing CIFTI connectivity files
  ☆65Updated 6 months ago
• neurolabusc / fsl_sub
  parallel FSL processing without requiring SGE
  ☆27Updated 3 years ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated 5 months ago
• HALFpipe / HALFpipe
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
  ☆92Updated this week
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆76Updated 4 years ago
• MASILab / SynBOLD-DisCo
  Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
  ☆25Updated last year
• srikash / presurfer
  Scripts to prepare MP2RAGE for Freesurfer
  ☆28Updated last year
• dorianps / LESYMAP
  Lesion to Symptom Mapping in R
  ☆33Updated 11 months ago
• bids-apps / MRtrix3_connectome
  Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…
  ☆51Updated last year
• gllmflndn / gifti
  MATLAB/Octave GIfTI Library
  ☆25Updated 2 months ago
• ChristianGaser / cat12
  Computational Anatomy Toolbox for SPM12 or SPM25
  ☆35Updated last week
• SIMEXP / load_confounds
  Load fMRIprep confounds in python
  ☆36Updated 3 years ago
• PennLINC / xcp_d
  Post-processing of fMRIPrep, NiBabies, and HCP outputs
  ☆91Updated this week
• NotaCS / Functionnectome
  Project your functional brain signal onto the white matter, and explore the pathways supporting brain functions.
  ☆30Updated 11 months ago
• maartenmennes / ICA-AROMA
  ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
  ☆93Updated 11 months ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated 2 weeks ago