Utility functions for working with DICOM and BIDS neuroimaging data
☆66May 29, 2026Updated 5 months ago
Alternatives and similar repositories for bidskit
Users that are interested in bidskit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create a BIDS structure for a DICOM folder.☆12Nov 6, 2017Updated 8 years ago
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆209Oct 26, 2026Updated last week
- Flexible DICOM conversion into structured directory layouts☆285Oct 5, 2026Updated 3 weeks ago
- Validator for the Brain Imaging Data Structure☆185Dec 11, 2025Updated 10 months ago
- Python tools for querying and manipulating BIDS datasets.☆269Oct 23, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆108May 17, 2024Updated 2 years ago
- MRI preprocessing pipeline☆13May 4, 2018Updated 8 years ago
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆56May 12, 2025Updated last year
- MATLAB program for viewing 3D fMRI statistical images☆54Oct 29, 2021Updated 5 years ago
- This is a mirror. Feel free to use the issue tracker. PRs welcome.☆11Sep 7, 2026Updated last month
- Website and projects for the OHBM Hackathon in Rome 2019☆86Nov 28, 2022Updated 3 years ago
- BIDScoin converts your source-level neuroimaging data to BIDS☆161Oct 22, 2026Updated last week
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆760Updated this week
- DICOM to NIfTI conversion, NIfTI tools☆103Oct 14, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆382Sep 17, 2026Updated last month
- Python pipeline for neuroimaging data☆14Sep 15, 2025Updated last year
- Neuroimaging in R Talk☆10Apr 9, 2016Updated 10 years ago
- The Starter-kit has moved to the new BIDS website.☆277Aug 20, 2026Updated 2 months ago
- colour map for brain imaging☆22Feb 12, 2026Updated 8 months ago
- BIDS App containing an instance of the SPM software.☆15Oct 5, 2026Updated 3 weeks ago
- Tools for dealing with neuroimaging data in the BIDS structure☆28Nov 21, 2018Updated 7 years ago
- Generate custom Docker and Singularity images, and minimize existing containers☆361Updated this week
- FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC re…☆16Aug 19, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scripts for managing xnat, QC, and data analysis☆17Sep 9, 2026Updated last month
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,210Updated this week
- DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation☆19Mar 9, 2021Updated 5 years ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Mar 5, 2024Updated 2 years ago
- Visual programming for neuroimaging analysis☆65Dec 6, 2019Updated 6 years ago
- Flexible modeling of neuroimaging data in R☆34Sep 14, 2020Updated 6 years ago
- Quality assurance analyses of fMRI data collected while participants watched The Grand Budapest Hotel by Wes Anderson.☆30Nov 11, 2020Updated 5 years ago
- defacing utility for MRI images☆142Oct 26, 2026Updated last week
- Generate and run SLURM jobs on HPCs☆13Aug 13, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GUI-based MATLAB software for optimizing the design of fMRI tasks☆16Dec 14, 2023Updated 2 years ago
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆32Jul 24, 2025Updated last year
- Standalone MATLAB implementation of permutation TFCE correction☆45Dec 21, 2018Updated 7 years ago
- Scripts and documentation for the PCP's protocol for assessing data quality.☆42Oct 4, 2021Updated 5 years ago
- Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance☆33Mar 22, 2023Updated 3 years ago
- Lesion to Symptom Mapping in R☆36May 22, 2024Updated 2 years ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆121Oct 26, 2026Updated last week