Utility functions for working with DICOM and BIDS neuroimaging data
☆67May 29, 2026Updated 3 months ago
Alternatives and similar repositories for bidskit
Users that are interested in bidskit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create a BIDS structure for a DICOM folder.☆12Nov 6, 2017Updated 8 years ago
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆206Aug 9, 2026Updated 3 weeks ago
- Flexible DICOM conversion into structured directory layouts☆283Aug 27, 2026Updated last week
- Python tools for querying and manipulating BIDS datasets.☆265Updated this week
- Validator for the Brain Imaging Data Structure☆186Dec 11, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆56May 12, 2025Updated last year
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆107May 17, 2024Updated 2 years ago
- MATLAB program for viewing 3D fMRI statistical images☆54Oct 29, 2021Updated 4 years ago
- This is a mirror. Feel free to use the issue tracker. PRs welcome.☆11Jul 24, 2026Updated last month
- Python pipeline for neuroimaging data☆14Sep 15, 2025Updated 11 months ago
- Tools for dealing with neuroimaging data in the BIDS structure☆28Nov 21, 2018Updated 7 years ago
- The Starter-kit has moved to the new BIDS website.☆277Aug 20, 2026Updated 2 weeks ago
- Website and projects for the OHBM Hackathon in Rome 2019☆86Nov 28, 2022Updated 3 years ago
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆747Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BIDScoin converts your source-level neuroimaging data to BIDS☆159Jul 2, 2026Updated 2 months ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆372Jul 20, 2026Updated last month
- scripts for managing xnat, QC, and data analysis☆17Updated this week
- DICOM to NIfTI conversion, NIfTI tools☆103Apr 1, 2026Updated 5 months ago
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆32Jul 24, 2025Updated last year
- Generate custom Docker and Singularity images, and minimize existing containers☆361Updated this week
- Visual programming for neuroimaging analysis☆65Dec 6, 2019Updated 6 years ago
- FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC re…☆16Aug 19, 2019Updated 7 years ago
- DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation☆19Mar 9, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance☆33Mar 22, 2023Updated 3 years ago
- Scripts and documentation for the PCP's protocol for assessing data quality.☆42Oct 4, 2021Updated 4 years ago
- Flexible modeling of neuroimaging data in R☆34Sep 14, 2020Updated 5 years ago
- Quality assurance analyses of fMRI data collected while participants watched The Grand Budapest Hotel by Wes Anderson.☆30Nov 11, 2020Updated 5 years ago
- Pipeline software "Pipeline for Analyzing braiN Diffusion imAges" for processing diffusion MRI data.☆13Jul 16, 2018Updated 8 years ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,184Updated this week
- Standalone MATLAB implementation of permutation TFCE correction☆45Dec 21, 2018Updated 7 years ago
- Lesion to Symptom Mapping in R☆35May 22, 2024Updated 2 years ago
- GUI-based MATLAB software for optimizing the design of fMRI tasks☆16Dec 14, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Using ANTs to process multiple MR image types for a single subject☆26Oct 9, 2017Updated 8 years ago
- To convert Human Connectome projects(HCP) data to BIDS std☆32Aug 1, 2022Updated 4 years ago
- MRI preprocessing pipeline☆13May 4, 2018Updated 8 years ago
- R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data☆43Sep 10, 2025Updated 11 months ago
- NeuroElf (MATLAB)☆19Jan 19, 2025Updated last year
- Python functions to convert E-Prime files to csvs. Not currently being developed, but issues and PRs welcome!☆50Dec 22, 2020Updated 5 years ago
- colour map for brain imaging☆22Feb 12, 2026Updated 6 months ago