Utility functions for working with DICOM and BIDS neuroimaging data
☆66May 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for bidskit
Users that are interested in bidskit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create a BIDS structure for a DICOM folder.☆12Nov 6, 2017Updated 8 years ago
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆200Jun 8, 2026Updated last week
- Flexible DICOM conversion into structured directory layouts☆280Jun 8, 2026Updated last week
- Python tools for querying and manipulating BIDS datasets.☆259Jun 8, 2026Updated last week
- Validator for the Brain Imaging Data Structure☆185Dec 11, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆53May 12, 2025Updated last year
- ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.☆106May 17, 2024Updated 2 years ago
- MATLAB program for viewing 3D fMRI statistical images☆54Oct 29, 2021Updated 4 years ago
- This is a mirror. Feel free to use the issue tracker. PRs welcome.☆11Jan 13, 2026Updated 5 months ago
- Tools for dealing with neuroimaging data in the BIDS structure☆28Nov 21, 2018Updated 7 years ago
- The Starter-kit has moved to the new BIDS website.☆277Feb 21, 2025Updated last year
- BIDScoin converts your source-level neuroimaging data to BIDS☆158Apr 16, 2026Updated last month
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆737Jun 1, 2026Updated 2 weeks ago
- scripts for managing xnat, QC, and data analysis☆17May 21, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆366Jan 28, 2026Updated 4 months ago
- Website and projects for the OHBM Hackathon in Rome 2019☆87Nov 28, 2022Updated 3 years ago
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆31Jul 24, 2025Updated 10 months ago
- DICOM to NIfTI conversion, NIfTI tools☆102Apr 1, 2026Updated 2 months ago
- R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data☆42Sep 10, 2025Updated 9 months ago
- Python pipeline for neuroimaging data☆14Sep 15, 2025Updated 9 months ago
- Generate custom Docker and Singularity images, and minimize existing containers☆357May 1, 2026Updated last month
- DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation☆19Mar 9, 2021Updated 5 years ago
- Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance☆33Mar 22, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Flexible modeling of neuroimaging data in R☆34Sep 14, 2020Updated 5 years ago
- FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC re…☆16Aug 19, 2019Updated 6 years ago
- Scripts and documentation for the PCP's protocol for assessing data quality.☆41Oct 4, 2021Updated 4 years ago
- Visual programming for neuroimaging analysis☆64Dec 6, 2019Updated 6 years ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,162Updated this week
- Quality assurance analyses of fMRI data collected while participants watched The Grand Budapest Hotel by Wes Anderson.☆30Nov 11, 2020Updated 5 years ago
- Standalone MATLAB implementation of permutation TFCE correction☆43Dec 21, 2018Updated 7 years ago
- GUI-based MATLAB software for optimizing the design of fMRI tasks☆16Dec 14, 2023Updated 2 years ago
- Using ANTs to process multiple MR image types for a single subject☆26Oct 9, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Lesion to Symptom Mapping in R☆35May 22, 2024Updated 2 years ago
- To convert Human Connectome projects(HCP) data to BIDS std☆32Aug 1, 2022Updated 3 years ago
- MRI preprocessing pipeline☆13May 4, 2018Updated 8 years ago
- Pipeline software "Pipeline for Analyzing braiN Diffusion imAges" for processing diffusion MRI data.☆13Jul 16, 2018Updated 7 years ago
- colour map for brain imaging☆22Feb 12, 2026Updated 4 months ago
- Tools for working with brain atlas labels☆20Oct 10, 2023Updated 2 years ago
- GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D…☆135Apr 27, 2026Updated last month