Alternatives and similar repositories for bidskit:

Users that are interested in bidskit are comparing it to the libraries listed below

• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 3 months ago
• arielletambini / denoiser
  Nuisance removal tool for fMRI data
  ☆56Updated 11 months ago
• bids-apps / HCPPipelines
  A BIDS App for minimal preprocessing using the HCP Pipelines
  ☆33Updated 3 months ago
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆46Updated last week
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆75Updated 3 years ago
• DCAN-Labs / abcd-dicom2bids
  For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of sp…
  ☆19Updated 3 months ago
• ChristianGaser / cat12
  Computational Anatomy Toolbox for SPM12 or SPM25
  ☆34Updated this week
• templateflow / templateflow
  The TemplateFlow Archive - A DataLad super-dataset
  ☆75Updated 10 months ago
• PennLINC / xcpEngine
  Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
  ☆65Updated last year
• ReproNim / reproin
  A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
  ☆48Updated 2 months ago
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆63Updated 2 months ago
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆37Updated 2 years ago
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆34Updated 5 years ago
• maartenmennes / ICA-AROMA
  ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
  ☆92Updated 8 months ago
• preprocessed-connectomes-project / quality-assessment-protocol
  Scripts and documentation for the PCP's protocol for assessing data quality.
  ☆40Updated 3 years ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆69Updated 2 months ago
• Washington-University / cifti-matlab
  MATLAB code for reading and writing CIFTI connectivity files
  ☆65Updated 3 months ago
• thomastweets / freesurfer-7t-pipeline
  A freesurfer segmentation pipeline optimised for 7T datasets
  ☆11Updated 8 years ago
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆65Updated 6 months ago
• neurolabusc / fsl_sub
  parallel FSL processing without requiring SGE
  ☆27Updated 3 years ago
• yetianmed / subcortex
  ☆108Updated last year
• MICA-MNI / BrainStat
  A statistics and context decoding toolbox for neuroimaging.
  ☆100Updated 4 months ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆91Updated this week
• koenhaak / congrads
  Congrads is a data-driven method for mapping the spatial organisation of connectivity within a pre-defined region-of-interest (i.e. conne…
  ☆36Updated 6 years ago
• spinicist / nanslice
  A Python implementation of 'dual-coding'
  ☆41Updated 9 months ago
• MASILab / SynBOLD-DisCo
  Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
  ☆21Updated last year
• bids-apps / MRtrix3_connectome
  Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…
  ☆49Updated last year
• miykael / atlasreader
  Python interface for generating coordinate tables and region labels from statistical MRI images
  ☆91Updated last week
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆62Updated this week
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆61Updated 3 months ago