reiserlab / Component-Designs
Some 3D printing, laser cutting, PCBs used in the lab.
☆13Updated 3 months ago
Related projects: ⓘ
- ☆13Updated 3 years ago
- An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording☆25Updated 2 years ago
- FicTrac: A webcam-based method for tracking spherical motion and generating fictive animal paths.☆25Updated 4 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆59Updated last week
- Python tools for analysing body movements across space and time☆95Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated 2 weeks ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆52Updated 3 months ago
- pipeline for volumetric cell segmentation☆10Updated this week
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆25Updated 3 months ago
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆37Updated last month
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆88Updated 10 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated 9 months ago
- A lightweight python module to interact with atlases for systems neuroscience☆124Updated 2 weeks ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆52Updated last year
- An arbitrary-spectrum spatial visual stimulator for vision research☆16Updated 9 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆60Updated last week
- Match suite2p ROIs between imaging sessions☆21Updated 5 years ago
- ☆29Updated 11 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆41Updated last year
- miniscope analysis pipeline with interactive visualizations☆91Updated 2 months ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆47Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆61Updated 3 weeks ago
- Control and design of two-photon photostimulation experiments☆15Updated 8 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆58Updated 9 months ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆13Updated last year
- Utility to create a basic Python project structure with tests, CI etc.☆22Updated 2 weeks ago
- A modular package to control stimulation and track behaviour☆42Updated this week
- All things Miniscope v4☆132Updated last year
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33Updated 3 months ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated 9 months ago