Alternatives and similar repositories for behavior-mapping

Users that are interested in behavior-mapping are comparing it to the libraries listed below

• gordonberman / MotionMapper
  Sample implementation of the MotionMapper behavioral analysis algorithms
  ☆82Updated 5 years ago
• jessedmarshall / CAPTURE_demo
  Demo code for CAPTURE and DANNCE
  ☆29Updated 4 years ago
• kristinbranson / JAABA
  Janelia Animal Behavior Detector
  ☆82Updated 3 months ago
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆47Updated last year
• de-Bivort-Lab / margo
  High-throughput real-time tracker for delivery of stimuli and measurement of animal behavior.
  ☆23Updated last month
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆103Updated 6 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆62Updated 2 years ago
• YijieYin / connectome_interpreter
  ☆27Updated 2 weeks ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆39Updated 2 years ago
• bozeklab / DISK
  Deep Imputation for Skeleton data
  ☆26Updated last week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆98Updated last year
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• int-brain-lab / mtscomp
  Multichannel time series lossless compression in pure Python based on NumPy and zlib
  ☆43Updated 10 months ago
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆32Updated last year
• calebweinreb / SNUB
  ☆29Updated 3 months ago
• NeurodataWithoutBorders / nwbwidgets
  Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
  ☆51Updated 2 weeks ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated 3 weeks ago
• pillowlab / BinaryPursuitSpikeSorting
  Detect synchronous and overlapped spikes in extracellular recordings using Binary Pursuit (Pillow et al 2013)
  ☆12Updated 11 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• bonsai-rx / deeplabcut
  A Bonsai interface for real-time markerless pose estimation using DeepLabCut
  ☆53Updated 8 months ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• cortex-lab / alyx
  Database for experimental neuroscience laboratories
  ☆50Updated this week
• DeshmukhLab / PicameraPaper
  Saxena et al., 2018. Inexpensive, scalable camera system for tracking rats in large spaces
  ☆14Updated 7 years ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 3 months ago
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated last week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆28Updated 6 years ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆47Updated this week
• agiovann / CalBlitz
  Blazing fast calcium imaging analysis toolbox
  ☆21Updated 8 years ago
• dattalab / moseq2-app
  MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.
  ☆39Updated 3 months ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆35Updated this week