rdcrawford / cognac
cognac: COre GeNe Alignment Concatenation
☆9Updated 3 years ago
Alternatives and similar repositories for cognac:
Users that are interested in cognac are comparing it to the libraries listed below
- http://huttenhower.sph.harvard.edu/waafle☆13Updated 4 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 7 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 4 months ago
- ☆25Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 8 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 10 months ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 2 months ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Code for de novo discovery of viral families in virome data☆14Updated 10 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Population genomics from metagenomes☆11Updated 7 months ago
- scripts for microbiome analysis☆11Updated 9 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆10Updated 4 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 4 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 9 months ago
- ☆13Updated 7 years ago
- Prediction of microbial interactions in complex communities☆12Updated 8 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆34Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆11Updated 3 weeks ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated last month