de Bruijn graph construction tool
☆19Apr 26, 2015Updated 11 years ago
Alternatives and similar repositories for debruijn
Users that are interested in debruijn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- de Bruijn CompAction in Low Memory☆23Jan 15, 2016Updated 10 years ago
- Python implementation of the BCALM algorithm☆15Dec 2, 2016Updated 9 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- autoscan - automatic fingerprint of visited networks☆11Nov 2, 2013Updated 12 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Secure PasteBin for Google App Engine☆35Mar 11, 2014Updated 12 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 10 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Dec 6, 2013Updated 12 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- first test 3D fluid Openframeworks☆13Feb 4, 2015Updated 11 years ago
- Easiest way to work with your Backbone.Model nested array-object attributes.☆27Aug 4, 2015Updated 10 years ago
- Space-Efficient, High-Performance Rank & Select Structures on Uncompressed Bit Sequences☆55Jan 3, 2024Updated 2 years ago
- GLSL test Ray Tracing openframeworks☆10Dec 11, 2014Updated 11 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Feb 15, 2015Updated 11 years ago
- User Space NVMe Driver (modified for use on Zynq UltraScale+ MPSoC)☆11Sep 26, 2018Updated 7 years ago
- VisualTracker is an open source modular sequencer with graphical user interface written for Pure Data☆12Nov 30, 2015Updated 10 years ago
- Reduced on-disk Suffix Array☆22Oct 9, 2013Updated 12 years ago
- A persistent queue implemented in Go.☆29Dec 31, 2021Updated 4 years ago
- Oblivious Memory Access under Fully Homomorphic Encryption☆13Aug 12, 2015Updated 10 years ago
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Sep 7, 2022Updated 3 years ago
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- ☆12Jan 8, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Example code for Build Your Own AJAX Web Applications book☆16Apr 29, 2013Updated 13 years ago
- Pulled out Linux kernel code to run in userland so they could be targeted by AFL and KLEE☆20Jan 29, 2020Updated 6 years ago
- KDTree implementation for fast nearest-neighbor search on variable-sized points, based on nanoflann☆13Feb 10, 2017Updated 9 years ago
- Generate QR codes in UNIX way☆12Aug 5, 2019Updated 6 years ago
- Code from zlib.net project☆12Feb 25, 2026Updated 3 months ago
- a survey about light installation in public☆15Sep 15, 2018Updated 7 years ago
- Verified vector clocks, with Coq!☆14Dec 15, 2013Updated 12 years ago
- Poisson Disk Sampling for openFrameworks.☆14Jun 21, 2017Updated 8 years ago
- EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms☆10Nov 30, 2014Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A parallel version of ofxTSNE.☆16Apr 10, 2019Updated 7 years ago
- Easy handling of memory-mapped files☆22Mar 28, 2014Updated 12 years ago
- SUccinct Retrieval Framework☆21Jan 24, 2016Updated 10 years ago
- Grail+ is a set of command line tools for manipulating non-deterministic finite automata (NFAs), non-deterministic pushdown automata (PDA…☆10Oct 22, 2016Updated 9 years ago
- Sapphire source code☆11Nov 17, 2017Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- Tiny Transactions on Computer Systems (TinyToCS) Site☆32Mar 8, 2016Updated 10 years ago