pzweuj / DNApipelineLinks
通过配置文件实现一条命令完成常见DNA线的生信分析
☆8Updated 4 years ago
Alternatives and similar repositories for DNApipeline
Users that are interested in DNApipeline are comparing it to the libraries listed below
Sorting:
- All kinds of NGS analysis pipeline☆12Updated 5 years ago
- lncRNA分析流程☆8Updated 6 years ago
- a bucket of bioinformatics scripts☆13Updated 2 weeks ago
- Readme☆10Updated 5 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…☆17Updated 2 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated 9 months ago
- do some exercise☆12Updated 4 months ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆16Updated 2 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- I often use some of the self-written programs.☆16Updated 3 months ago
- ☆13Updated 2 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Updated 11 months ago
- lncRNA-screen☆25Updated 8 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆16Updated 5 years ago
- ☆19Updated 11 months ago
- Direct RNA publication scripts☆11Updated 7 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆21Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- toolkit to process gtf files☆17Updated 3 years ago
- Instructions and helpful R code for Running GEMMA and GAPIT☆12Updated 7 years ago
- The cattle Genotype-Tissue Expression atlas v1☆26Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago
- RNA-seq analysis scripts☆15Updated 2 months ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13Updated 2 years ago
- ☆24Updated 2 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆28Updated 4 months ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Updated 4 years ago