Alternatives and similar repositories for GWAS_Pipelines

Users that are interested in GWAS_Pipelines are comparing it to the libraries listed below

• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 6 years ago
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆23Updated 2 years ago
• LewisLabUCSD / NGS-Pipeline
  All kinds of NGS analysis pipeline
  ☆12Updated 6 years ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• YinYuan-001 / muntjac_code
  ☆10Updated 4 years ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 5 years ago
• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 8 years ago
• pablobio / GALLO
  Genomic Annotation in Livestock for positional candidate LOci
  ☆13Updated 4 years ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆21Updated 4 months ago
• yukaiquan / biotools
  I often use some of the self-written programs.
  ☆16Updated last week
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆28Updated 2 years ago
• raymondkiu / R-scripts-graphing-statistics
  My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq
  ☆12Updated 2 years ago
• lulab / shared_scripts
  shared scripts in Lu Lab @ Tsinghua University
  ☆14Updated 7 years ago
• Rowena-h / FusariumLifestyles
  Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣
  ☆11Updated 2 years ago
• xuechantian / Plant-LncRNA-pipline
  ☆15Updated 8 months ago
• GP2-TNC-WG / GP2-Beginner-Bioinformatics-for-PD-Genetics
  ☆12Updated 3 years ago
• wen-chen / GCEN
  GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
  ☆21Updated 3 years ago
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• songtaogui / pan-Zea_utilities
  the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics
  ☆17Updated 3 years ago
• zhaoshuoxp / lncRNA
  De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk
  ☆10Updated 2 years ago
• kaspermunch / PopulationGenomicsCourse
  Course in population genomics at BiRC
  ☆12Updated 6 months ago
• mortazavilab / cerberus
  ☆18Updated last year
• wl13 / BioScripts
  Scripts for bioinformatics data processing and analysis
  ☆12Updated 2 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 7 months ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆12Updated 6 months ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated last year
• UPSCb / UPSCb-common
  Common scripts
  ☆15Updated last week
• ShawnWx2019 / emmax-pipeline
  GWAS analysis process based on EMMAX software
  ☆15Updated last year
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago