Alternatives and similar repositories for GWAS_Pipelines:

Users that are interested in GWAS_Pipelines are comparing it to the libraries listed below

• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 5 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆25Updated 2 years ago
• lulab / shared_scripts
  shared scripts in Lu Lab @ Tsinghua University
  ☆10Updated 6 years ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated 3 months ago
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 4 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• LewisLabUCSD / NGS-Pipeline
  All kinds of NGS analysis pipeline
  ☆12Updated 5 years ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆23Updated 2 years ago
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆19Updated last year
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated 4 months ago
• ben-laufer / Tag-seq
  3’ Tag RNA-seq pipeline (Work in progress)
  ☆10Updated 4 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆35Updated last week
• fengcong3 / HAPPE
  A tool to visualize the haplotype pattern and various information in excel.
  ☆18Updated 3 weeks ago
• whweve / IntAssoPlot
  ☆16Updated last year
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆15Updated last month
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆32Updated last year
• YaoLab-Bioinfo / ECOGEMS
  Efficient compression and retrieve of genotype data with integer sparse matrices
  ☆16Updated last year
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• Iceylee / NGS-Pacbio
  Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.
  ☆9Updated 5 years ago
• evodify / genotype-files-manipulations
  Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
  ☆10Updated 4 years ago
• jleluyer / wgcna_workflow
  Analysis of co-expression networks from RNA-seq data
  ☆11Updated 7 years ago
• nf-core / dualrnaseq
  Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
  ☆21Updated this week
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆26Updated 5 years ago
• ZhikunWu / Bioinformatic-resources
  ☆19Updated 4 years ago
• JianYang-Lab / crussmap
  crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
  ☆14Updated last year
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated 7 months ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆32Updated 2 months ago