pygridtools / gridmap
Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).
☆84Updated last year
Related projects ⓘ
Alternatives and complementary repositories for gridmap
- Python wrapper around the C DRMAA library.☆109Updated 5 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆148Updated 4 years ago
- Deploy Dask on DRMAA clusters☆40Updated 3 years ago
- High-level python wapper for the Sun Grid Engine (SGE) using DRMAA and ZMQ☆21Updated 10 years ago
- This is a beginner's tutorial to Snakemake☆70Updated 8 years ago
- Create cwl workflows by writing a simple Python script☆40Updated 4 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆173Updated 3 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 4 years ago
- DRMAA for Slurm: Implementation of the DRMAA C bindings for Slurm☆49Updated last month
- IPython magic for SLURM.☆67Updated 4 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 2 weeks ago
- Compatibility wrappers for adapting SGE workflows to SLURM☆9Updated last week
- Pretty GridEngine, Torque and Platform LSF status tables☆31Updated 8 years ago
- dead Simple Queue - Slurm arrays for files with jobs in them.☆23Updated 2 years ago
- ☆45Updated 8 years ago
- StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).☆37Updated 4 years ago
- submit jobs to slurm with quick-and-dirty python☆94Updated last year
- A flexible, pragmatic workflow tool.☆31Updated last month
- A collection of visualizations for genomics related information for use with Jupyter notebooks.☆10Updated 2 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Updated 7 years ago
- Deploy Dask on job schedulers like PBS, SLURM, and SGE☆235Updated 2 months ago
- PyCogent: Official repository for software and unit tests☆89Updated 3 years ago
- Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs☆68Updated 2 years ago
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 8 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 3 years ago
- ☆16Updated last year
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago
- sequence alignment. global, local, glocal.☆40Updated 7 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆82Updated 3 years ago
- Tools to manage jobs on supercomputer☆40Updated 9 years ago