pygridtools / gridmapLinks
Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).
☆84Updated 2 years ago
Alternatives and similar repositories for gridmap
Users that are interested in gridmap are comparing it to the libraries listed below
Sorting:
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆175Updated 4 years ago
- Deploy Dask on DRMAA clusters☆40Updated 4 years ago
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 9 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 5 years ago
- Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs☆69Updated 3 years ago
- submit jobs to slurm with quick-and-dirty python☆95Updated 2 years ago
- High-level python wapper for the Sun Grid Engine (SGE) using DRMAA and ZMQ☆20Updated 11 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated last year
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆224Updated 5 months ago
- Reproducible machine learning analysis of gene expression and alternative splicing data☆125Updated 2 years ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Updated 8 years ago
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- like a conda-metapackage but for channels!☆69Updated 4 years ago
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- ☆45Updated 9 years ago
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- fast, pure-python interval overlap testing☆52Updated 5 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 4 years ago
- Python Scientific Pipeline Management System☆71Updated 2 years ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- super-slick Slurm and Condor cluster execution for Python☆25Updated 2 years ago
- Tools to manage jobs on supercomputer☆41Updated 10 years ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆62Updated 3 months ago
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).☆36Updated 5 years ago