Alternatives and similar repositories for docker-sge

Users that are interested in docker-sge are comparing it to the libraries listed below

• FredHutch / easybuild-life-sciences
  Howto and implementation documentation
  ☆22Updated this week
• HpcGridRunner / HpcGridRunner
  source code for HpcGridRunner
  ☆17Updated 3 years ago
• larsgr / RLinuxModules
  R package that makes linux environment modules available from R
  ☆11Updated 2 years ago
• natefoo / slurm-drmaa
  DRMAA for Slurm: Implementation of the DRMAA C bindings for Slurm
  ☆49Updated 2 months ago
• ChillarAnand / fadapa
  FAstqc DAta PArser - A minimal parser to parse FastQC output data.
  ☆16Updated 9 years ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• datasnakes / beRi
  beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
  ☆14Updated 5 years ago
• NIH-HPC / singularity-def-files
  definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster
  ☆30Updated 4 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• LUMC / galaxy-launcher
  A project to launch the galaxy docker image easily using ansible
  ☆11Updated 5 years ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆27Updated 6 years ago
• SciLifeLab / NGI-MethylSeq
  This pipeline has moved! Please see:
  ☆11Updated 7 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• pcingola / SnpSift
  ☆38Updated 3 months ago
• singularityhub / singularity2docker
  convert a singularity image back to Docker, full circle! #containerfriends
  ☆25Updated 5 years ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆14Updated 11 months ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 6 years ago
• Snakemake-Profiles / pbs-torque
  ☆16Updated last year
• alastair-droop / qsubsec
  Simple tokenised template system for SGE
  ☆10Updated 2 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• biopython / biopython_docker
  Dockerfiles to build Biopython instances
  ☆28Updated 8 years ago
• galaxyproject / usegalaxy-playbook
  Ansible Playbook for usegalaxy.org
  ☆32Updated this week
• IGBB / quack
  A FASTQ quality assessment tool
  ☆14Updated 2 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 5 years ago
• lindenb / verticalize
  Simple tool to verticalize text delimited files.
  ☆36Updated last year
• afgane / slurmscale
  An external library for delivering Slurm Elastic Computing.
  ☆11Updated 8 years ago
• PawseySC / singularity-containers
  Webinars&Tutorial on Containers on HPC and Cloud with Singularity
  ☆27Updated 3 years ago