Alternatives and similar repositories for docker-sge

Users that are interested in docker-sge are comparing it to the libraries listed below

• FredHutch / easybuild-life-sciences
  Howto and implementation documentation
  ☆22Updated 2 weeks ago
• BioContainers / specs
  BioContainers specifications
  ☆52Updated 2 years ago
• BioContainers / mulled
  Mulled - Automatized Containerized Software Repository
  ☆66Updated last year
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• NIH-HPC / singularity-def-files
  definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster
  ☆32Updated 4 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆60Updated last month
• GoogleCloudPlatform / solutions-google-compute-engine-cluster-for-grid-engine
  Grid Engine on Compute Engine provides a shell script to manage a Compute Engine cluster along with instructions on how to install and c…
  ☆22Updated 8 years ago
• Snakemake-Profiles / pbs-torque
  ☆17Updated 2 years ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated last year
• natefoo / slurm-drmaa
  DRMAA for Slurm: Implementation of the DRMAA C bindings for Slurm
  ☆48Updated last month
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 6 years ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• biopython / biopython_docker
  Dockerfiles to build Biopython instances
  ☆28Updated 9 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 7 years ago
• BioContainers / registry
  Docker for Bioinformatics
  ☆20Updated 2 weeks ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆59Updated 7 years ago
• HpcGridRunner / HpcGridRunner
  source code for HpcGridRunner
  ☆17Updated 4 years ago
• pcingola / SnpSift
  ☆38Updated last month
• phnmnl / phenomenal-h2020
  Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project
  ☆22Updated 9 months ago
• epruesse / ymp
  Flexible omics pipeline
  ☆17Updated 3 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• singularityhub / singularity2docker
  convert a singularity image back to Docker, full circle! #containerfriends
  ☆25Updated 5 years ago
• pycogent / pycogent
  PyCogent: Official repository for software and unit tests
  ☆91Updated 4 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆39Updated 6 years ago
• ga4gh / task-execution-schemas
  ☆93Updated last month