Alternatives and similar repositories for gamtools:

Users that are interested in gamtools are comparing it to the libraries listed below

• epigen / cll-chromatin
  Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)
  ☆9Updated 7 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• ma-compbio / PEP
  ☆14Updated 4 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆23Updated 10 months ago
• zhangyan32 / HiCPlus
  ☆31Updated 5 years ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆34Updated 3 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆33Updated 7 years ago
• kundajelab / genomedisco
  Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
  ☆26Updated 6 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆40Updated 8 years ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆40Updated 2 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• PSI-Lab / HiCSR
  HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps
  ☆13Updated 2 years ago
• greenelab / tad_pathways_pipeline
  Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
  ☆11Updated 5 years ago
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆22Updated last month
• nvictus / lavaburst
  Chromatin domains bursting with flavor
  ☆12Updated 5 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆46Updated last year
• joed3 / GTExV6PRareVariation
  Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript
  ☆18Updated 7 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated last year
• Altius / hotspot2
  Implementation of hotspot2 by Eric Rynes
  ☆16Updated last year
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 2 years ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• gagneurlab / FRASER-old-gagneurlab
  ☆13Updated 9 months ago
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆40Updated 3 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated last year
• yiplabcuhk / JEME
  JEME method for predicting enhancer targets
  ☆11Updated 7 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆49Updated 5 years ago
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆32Updated 5 years ago