pombo-lab / gamtools
Processing, quality control and analysis of GAM datsets
☆9Updated last year
Alternatives and similar repositories for gamtools:
Users that are interested in gamtools are comparing it to the libraries listed below
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- ☆31Updated 5 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- ☆14Updated 4 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Implementation of hotspot2 by Eric Rynes☆17Updated last year
- Tissue-specific variant effect predictions on splicing☆42Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- A tool to assess the quality and distribution of genomic data☆16Updated 3 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆16Updated 2 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 10 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆15Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆12Updated 4 years ago
- Signed LD profile regression code☆17Updated last month
- Generate cellular maps of differentiation manifolds with complex topologies.☆26Updated 6 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆18Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Poisson-based algorithm for stable inference of DNA Structure☆36Updated 3 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- simplified cellranger for long-read data☆18Updated 6 months ago