A simple BLOSUM module for python3
☆18Nov 21, 2025Updated 4 months ago
Alternatives and similar repositories for blosum
Users that are interested in blosum are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Nov 3, 2021Updated 4 years ago
- Supplementary data for the ACME algorithm☆23Oct 2, 2022Updated 3 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 6 years ago
- ☆13Jun 5, 2024Updated last year
- Approximate subgraph motif mining through learnable edge contraction.☆15Aug 3, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆39Mar 24, 2026Updated 3 weeks ago
- ☆20Mar 20, 2022Updated 4 years ago
- Fast DNA manipulation for Rust and Python☆64Mar 10, 2026Updated last month
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Feb 27, 2026Updated last month
- Python implementation of Nussinov RNA folding algorithm and recursive backtrack.☆10Oct 29, 2020Updated 5 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 8 months ago
- Official repository for the paper "Partition and Code: learning how to compress graphs" (NeurIPS'21) https://arxiv.org/abs/2107.01952☆36Oct 26, 2021Updated 4 years ago
- PaiNN in jax☆11Jan 14, 2025Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated last month
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Massively-Parallel Natural Extension of Reference Frame☆34Jan 18, 2023Updated 3 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 4 months ago
- A general purpose template driven code generator☆19Nov 16, 2021Updated 4 years ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- Official Code Repository for the paper "Graph Self-supervised Learning with Accurate Discrepancy Learning" (NeurIPS 2022)☆18Oct 10, 2022Updated 3 years ago
- Rapid structure-based virtual screening for RNA targets.☆27Mar 6, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Missile Command video game Atari clone coding in Python☆12Feb 3, 2024Updated 2 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 6 months ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆16Apr 6, 2026Updated last week
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 4 years ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆15Aug 5, 2022Updated 3 years ago
- ☆10Jun 9, 2025Updated 10 months ago
- Python Clone of the game "Color Switch"☆10Oct 15, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- ☆14Dec 8, 2022Updated 3 years ago
- Interpretable genotype-phenotype landscape modeling☆36Dec 3, 2023Updated 2 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago