Alternatives and similar repositories for seq-align:

Users that are interested in seq-align are comparing it to the libraries listed below

• liyu95 / DeepSimulator
  The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
  ☆120Updated 4 years ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆131Updated last year
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆67Updated 2 years ago
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 3 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated last month
• ljdursi / poapy
  A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
  ☆73Updated 9 months ago
• walaj / SeqLib
  C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  ☆137Updated 7 months ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆124Updated last year
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆108Updated 5 months ago
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆244Updated 3 weeks ago
• lh3 / minimap
  This repo is DEPRECATED. Please use minimap2, the successor of minimap.
  ☆105Updated 7 years ago
• mateidavid / nanocall
  An Oxford Nanopore Basecaller
  ☆71Updated 3 years ago
• agordon / fastx_toolkit
  FASTA/FASTQ pre-processing programs
  ☆183Updated 3 years ago
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆90Updated 3 years ago
• ocxtal / minialign
  [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…
  ☆125Updated 6 years ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆119Updated last week
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆165Updated last week
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆46Updated 3 years ago
• BioinformaticsToolsmith / MeShClust
  MeShClust: an intelligent tool for clustering DNA sequences
  ☆38Updated 3 years ago
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆113Updated last year
• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 2 years ago
• maickrau / GraphAligner
  ☆268Updated 4 months ago
• torognes / swipe
  Smith-Waterman database searches with inter-sequence SIMD parallelisation
  ☆58Updated last year
• isovic / graphmap
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆182Updated 5 years ago
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆93Updated 6 years ago
• parklab / bamsnap
  ☆119Updated 4 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year