niaid / baseline
Reproducible workflows for the data analysis of "Baseline" project
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for baseline
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆37Updated 6 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Cancer Dependency Map package☆24Updated 2 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated 10 months ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 5 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- Explore design matrices interactively with R/Shiny☆36Updated last week
- Functional enrichment analysis of high-throughput omics data☆20Updated 4 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Statistical power studies for multi-omics experiments.☆30Updated last year
- ATACseqQC tutorials for BioC 2019 workshop☆15Updated 4 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- Visualise correlation results and test significancies of these☆21Updated 4 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆20Updated last year
- ☆12Updated 4 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆27Updated 4 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- ☆62Updated last month
- ☆23Updated last year
- Workshop for CNV analysis with Bioconductor☆17Updated 3 years ago
- See: https://www.iscb.org/ismb2018/3511#am1☆17Updated 6 years ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- R package for Flexible dot plots☆26Updated 2 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆21Updated this week
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- R package to visualize scRNA sequencing data.☆20Updated 2 years ago
- Brings SingleCellExperiment objects to the tidyverse☆35Updated last month
- Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…☆12Updated 3 years ago