TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
☆154Jun 30, 2022Updated 3 years ago
Alternatives and similar repositories for transformerCPI
Users that are interested in transformerCPI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequence-to-drug concept adds a perspective on drug design. It can serve as an alternative method to SBDD, particularly for proteins that…☆78Jul 20, 2023Updated 2 years ago
- MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)☆227Jul 15, 2022Updated 3 years ago
- This is a code for compound-protein interaction (CPI) prediction based on a graph neural network (GNN) for compounds and a convolutional …☆166Nov 28, 2020Updated 5 years ago
- Predicting Drug Protein Interaction using Quasi-Visual Question Answering System☆127Jul 25, 2024Updated last year
- AttentionDTA: prediction of drug–target binding affinity using attention model.https://ieeexplore.ieee.org/abstract/document/8983125☆13Aug 29, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Effective drug-target interaction prediction with mutual interaction neural network☆33May 8, 2022Updated 3 years ago
- ☆31Feb 22, 2022Updated 4 years ago
- ☆10Aug 20, 2023Updated 2 years ago
- GraphDTA: Predicting drug-target binding affinity with graph neural networks☆296Apr 13, 2021Updated 4 years ago
- Source code for "DeepDTA: deep drug-target binding affinity prediction"☆297Sep 22, 2023Updated 2 years ago
- DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)☆26Oct 22, 2020Updated 5 years ago
- Interpretable bilinear attention network with domain adaptation improves drug-target prediction.☆142Feb 19, 2023Updated 3 years ago
- a method for CPI and DTA prediction☆11Jun 18, 2022Updated 3 years ago
- ☆59Aug 23, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism. This repositor…☆45Jun 9, 2021Updated 4 years ago
- DeepCDA☆15Mar 19, 2020Updated 6 years ago
- Protein-compound affinity prediction through unified RNN-CNN☆153Jul 19, 2024Updated last year
- Graph neural network (GNN) for molecular property prediction (3D structure)☆104Nov 28, 2020Updated 5 years ago
- A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)☆1,143Jun 10, 2024Updated last year
- MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Pro…☆104Oct 6, 2020Updated 5 years ago
- Code for "An adaptive graph learning method for automated molecular interactions and properties predictions".☆40Jan 14, 2023Updated 3 years ago
- This is the repository containing the source code for my Master's thesis research, about predicting drug-target interaction using deep le…☆44Jun 18, 2019Updated 6 years ago
- a novel DTA predition method using graph neural network☆76Jul 12, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Jun 19, 2021Updated 4 years ago
- Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2☆18Mar 8, 2023Updated 3 years ago
- open source repository☆146Nov 30, 2023Updated 2 years ago
- 小白入门DTA方向，GraphDTA作为经典的DTA模型，对于python基础不好，深度学习代码实操不强者，本github将代码细致的进行注释阐述，旨在记录学习过程，帮助更多入门者尽快入门！☆29Mar 21, 2023Updated 3 years ago
- ☆115Apr 17, 2023Updated 2 years ago
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆112Jul 20, 2023Updated 2 years ago
- Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction☆39Nov 9, 2023Updated 2 years ago
- ☆32Feb 5, 2024Updated 2 years ago
- SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction☆20Jan 8, 2020Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- InteractionGraphNet: a Novel and Efficient Deep Graph Representation Learning Framework for Accurate Protein-Ligand Interaction Predictio…☆47Jun 21, 2023Updated 2 years ago
- Open source code for TankBind. Galixir Tenchnologies☆178Nov 1, 2023Updated 2 years ago
- An official Molecule Transformer Drug Target Interaction (MT-DTI) model☆35Nov 6, 2020Updated 5 years ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆256Sep 22, 2023Updated 2 years ago
- ☆14Jul 16, 2020Updated 5 years ago
- ☆18Nov 12, 2022Updated 3 years ago
- 💊 A 3D Generative Model for Structure-Based Drug Design (NeurIPS 2021)☆202Feb 12, 2023Updated 3 years ago