mrc-ide / EpiEstim
A tool to estimate time varying instantaneous reproduction number during epidemics
☆96Updated 7 months ago
Alternatives and similar repositories for EpiEstim:
Users that are interested in EpiEstim are comparing it to the libraries listed below
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆126Updated last week
- Updates to the synthetic contact matrices☆36Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated last month
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆53Updated 6 months ago
- epidemia package☆48Updated 2 years ago
- Source code for the EpiEstim app.☆31Updated 4 years ago
- ☆40Updated 9 months ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆47Updated this week
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- European Covid-19 Forecast Hub.☆48Updated 5 months ago
- Mathematical Modeling of Infectious Disease Dynamics☆250Updated last week
- Collection of analyses, packages, visualisations of COVID-19 data in R☆151Updated 2 years ago
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated 2 years ago
- Flu Scenario Modeling Hub☆11Updated this week
- Personal blog☆40Updated 4 years ago
- R package for statistical inference using partially observed Markov processes☆114Updated last week
- Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling s…☆71Updated 2 years ago
- ☆41Updated last month
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Data and Codebook for the HIT-COVID Project☆22Updated 3 years ago
- SEIR model for COVID-19 infection, including different clinical trajectories of infection☆195Updated 4 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆34Updated last week
- R package for "Epidemics: Models and data using R"☆55Updated 2 years ago
- An R package with Dynamic Models of infectious diseases☆29Updated 5 months ago
- COVID-19 Scenario Modeling Hub☆67Updated this week
- Repository for all scripts required to replicate the CFR analysis for paper submission.☆71Updated 4 years ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated last month
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆11Updated 9 months ago