mrc-ide / EpiEstimLinks
A tool to estimate time varying instantaneous reproduction number during epidemics
☆101Updated last week
Alternatives and similar repositories for EpiEstim
Users that are interested in EpiEstim are comparing it to the libraries listed below
Sorting:
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆132Updated last week
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆55Updated last year
- R package for deriving social mixing matrices from survey data.☆42Updated last week
- COVerAGE-DB: COVID-19 cases, deaths, and tests by age and sex☆58Updated 2 years ago
- epidemia package☆49Updated 3 years ago
- Source code for the EpiEstim app.☆35Updated 4 months ago
- Personal blog☆40Updated 5 years ago
- Collection of analyses, packages, visualisations of COVID-19 data in R☆151Updated 3 years ago
- SEIR+ model☆19Updated 5 months ago
- ☆23Updated 4 years ago
- R package for statistical inference using partially observed Markov processes☆118Updated last month
- ☆39Updated last year
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated last month
- R package dlnm☆89Updated 8 months ago
- Repository for all scripts required to replicate the CFR analysis for paper submission.☆71Updated 5 years ago
- Mathematical Modeling of Infectious Disease Dynamics☆262Updated last month
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Updated 4 years ago
- Extract raw underlying data from PDF figures☆55Updated last year
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- {tidycovid19}: An R Package to Download, Tidy and Visualize Covid-19 Related Data☆145Updated last year
- ☆43Updated 4 months ago
- ☆29Updated 3 months ago
- Repo for tutorial/paper on mixed-effect GAMs☆126Updated 5 years ago
- Resources for learning about the history of statistics and statisticians. By statisticians, for statisticians.☆169Updated 3 years ago
- COVID-19 Scenario Modeling Hub☆67Updated 7 months ago
- ggx☆154Updated 3 years ago
- A large set of JAGS examples using R☆98Updated 2 years ago
- ggplot-based graphics and useful functions for GAMs fitted using the mgcv package☆228Updated last month