A tool to estimate time varying instantaneous reproduction number during epidemics
☆105Sep 27, 2026Updated 3 weeks ago
Alternatives and similar repositories for EpiEstim
Users that are interested in EpiEstim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Oct 10, 2026Updated last week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆140Oct 5, 2026Updated last week
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆12Sep 10, 2024Updated 2 years ago
- Source code for the EpiEstim app.☆35Aug 7, 2025Updated last year
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆11Jul 11, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Analysis of COVID-19 transmission using cluster size distribution☆11Jun 14, 2022Updated 4 years ago
- ☣☣ Compute and visualise incidence☆57Jun 19, 2025Updated last year
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Feb 2, 2023Updated 3 years ago
- Estimate epidemiological delay distributions with brms☆16Sep 30, 2026Updated 2 weeks ago
- Workshop on hhh4 and the endemic-epidemic framework☆19Oct 13, 2022Updated 4 years ago
- epidemia package☆50Jun 24, 2022Updated 4 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated last year
- Simulate infectious disease transmission with contact tracing☆18Oct 5, 2026Updated last week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆39Sep 28, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Feb 2, 2023Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆19Aug 11, 2026Updated 2 months ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies☆22Jan 1, 2026Updated 9 months ago
- Some code for monkeypox☆10Jan 24, 2023Updated 3 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- ☆10Sep 30, 2025Updated last year
- ☆21Feb 15, 2023Updated 3 years ago
- Projections of future incidence☆14Dec 6, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers☆24Dec 12, 2020Updated 5 years ago
- ☆44Apr 13, 2026Updated 6 months ago
- Utilities for Scoring and Assessing Predictions☆64Sep 27, 2026Updated 2 weeks ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- Handling, Visualisation and Analysis of Epidemiological Contacts☆18Apr 17, 2025Updated last year
- ☆14Oct 20, 2023Updated 2 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Jul 11, 2019Updated 7 years ago
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Feb 13, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Nov 26, 2025Updated 10 months ago
- R Package for individual based epidemiological models☆34Jun 8, 2026Updated 4 months ago
- Additional censored event tools for Distributions.jl☆15Sep 1, 2026Updated last month
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆21Sep 30, 2026Updated 2 weeks ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Aug 4, 2026Updated 2 months ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11May 29, 2026Updated 4 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Aug 14, 2025Updated last year