WHO-Collaboratory / collaboratory-epipipeline-communityLinks
☆14Updated last year
Alternatives and similar repositories for collaboratory-epipipeline-community
Users that are interested in collaboratory-epipipeline-community are comparing it to the libraries listed below
Sorting:
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆36Updated 3 weeks ago
- ☆30Updated 2 months ago
- ☆41Updated 2 weeks ago
- Estimate epidemiological delay distributions with brms☆15Updated last month
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Create Contact Matrices from Population Data☆20Updated last month
- Analysing epidemic trends using AutoML approaches.☆18Updated 4 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆19Updated this week
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆14Updated 4 months ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- R package for easier interactions with the Go.Data API☆13Updated 2 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975☆15Updated 5 years ago
- Stand alone markdowns with embedded shiny apps for various eco&epi models☆24Updated last year
- CRAN Task View: Epidemiology☆22Updated last week
- R Package for individual based epidemiological models☆30Updated 9 months ago
- Valentin Lucet // Msc Thesis // 2018-2020☆10Updated this week
- ☆10Updated 8 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 3 weeks ago
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆46Updated last month
- Handling, Visualisation and Analysis of Epidemiological Contacts☆16Updated 2 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- opinion piece on discretization and multimodel averaging in ecological statistics☆25Updated last year
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆24Updated 5 months ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 8 months ago
- ☆9Updated 2 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series☆15Updated 2 months ago