☆44Apr 13, 2026Updated last month
Alternatives and similar repositories for collaboratory-epiparameter-community
Users that are interested in collaboratory-epiparameter-community are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆36Mar 23, 2026Updated 2 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 7 months ago
- ☆14Oct 20, 2023Updated 2 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆37May 8, 2026Updated 3 weeks ago
- Simulate infectious disease transmission with contact tracing☆17May 20, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Short course on parametric survival analysis☆15Apr 13, 2026Updated last month
- Estimate epidemiological delay distributions with brms☆15Apr 13, 2026Updated last month
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆24May 11, 2026Updated 2 weeks ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- The Flexible Epidemic Modeling Pipeline☆12Dec 15, 2025Updated 5 months ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆15Feb 19, 2025Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Sep 30, 2025Updated 7 months ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 4 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated last year
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆22May 14, 2026Updated 2 weeks ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 8 months ago
- ☆15Jun 4, 2020Updated 5 years ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Aug 11, 2022Updated 3 years ago
- Models and infrastructure for routine forecasting of respiratory disease burden☆16Updated this week
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Oct 30, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Slides and example code for debugging {targets} pipelines☆10Apr 17, 2025Updated last year
- Wastewater Epidemic Model☆15Jun 12, 2024Updated last year
- ICI3D R tutorials☆16May 18, 2026Updated last week
- Additional censored event tools for Distributions.jl☆14Updated this week
- US RSV Forecast Hub☆12May 22, 2026Updated last week
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 3 years ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆30Mar 9, 2026Updated 2 months ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Nov 11, 2025Updated 6 months ago
- Support EMCRs to develop their computing skills☆13May 7, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Utilities for Scoring and Assessing Predictions☆61May 12, 2026Updated 2 weeks ago
- R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility☆15Mar 26, 2026Updated 2 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆24Updated this week
- epidemia package☆50Jun 24, 2022Updated 3 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Jun 14, 2022Updated 3 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago