epiforecasts / covidregionaldata
An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.
☆37Updated 2 years ago
Alternatives and similar repositories for covidregionaldata:
Users that are interested in covidregionaldata are comparing it to the libraries listed below
- epidemia package☆48Updated 2 years ago
- R Package for individual based epidemiological models☆30Updated 7 months ago
- SEIR+ model☆19Updated 7 months ago
- ☆41Updated 3 weeks ago
- Source code for the EpiEstim app.☆31Updated 4 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated last month
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 2 weeks ago
- European Covid-19 Forecast Hub.☆48Updated 5 months ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆34Updated this week
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated this week
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆21Updated 2 years ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 2 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Extract raw underlying data from PDF figures☆55Updated last year
- CRAN Task View: Epidemiology☆22Updated 2 weeks ago
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated 2 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆96Updated 7 months ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- ☆29Updated 2 weeks ago
- Video lectures, slides and code for "The Mathematics and Statistics of Infectious Disease Outbreaks" course at Stockholm University☆34Updated 4 years ago
- Analysing epidemic trends using AutoML approaches.☆18Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆44Updated 7 months ago
- R package for easier interactions with the Go.Data API☆13Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago