epiforecasts / covidregionaldata
An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.
☆37Updated last year
Related projects ⓘ
Alternatives and complementary repositories for covidregionaldata
- ☆37Updated 3 weeks ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆58Updated last week
- R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters☆33Updated 3 weeks ago
- R Package for individual based epidemiological models☆30Updated 2 months ago
- SEIR transmission model of COVID-19. Documentation at:☆50Updated 9 months ago
- Extract raw underlying data from PDF figures☆56Updated 9 months ago
- ☆28Updated last month
- CRAN Task View: Epidemiology☆21Updated 2 weeks ago
- R package for easier interactions with the Go.Data API☆12Updated last year
- SEIR+ model☆20Updated 2 months ago
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆52Updated last month
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated 2 years ago
- An R package with Dynamic Models of infectious diseases☆29Updated last week
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆40Updated 2 months ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated last year
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 2 months ago
- Analysing epidemic trends using AutoML approaches.☆18Updated 3 years ago
- Bayesian SEIR model to estimate the effects of social-distancing on COVID-19☆27Updated 3 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆17Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated 11 months ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 3 weeks ago
- ☆14Updated last year
- Source code for the EpiEstim app.☆31Updated 4 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- Analysis of excess mortality in Italy during the COVID-19 pandemic☆15Updated 5 months ago
- Utility functions for the COVID-19 forecast hub☆17Updated 9 months ago
- COVerAGE-DB: COVID-19 cases, deaths, and tests by age and sex☆56Updated 11 months ago