epiforecasts / covidregionaldataLinks
An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.
☆37Updated 2 years ago
Alternatives and similar repositories for covidregionaldata
Users that are interested in covidregionaldata are comparing it to the libraries listed below
Sorting:
- R package for deriving social mixing matrices from survey data.☆42Updated last week
- SEIR transmission model of COVID-19. Documentation at:☆52Updated last year
- R Package for individual based epidemiological models☆30Updated 3 months ago
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated 3 years ago
- epidemia package☆48Updated 3 years ago
- SEIR+ model☆19Updated 3 months ago
- COVerAGE-DB: COVID-19 cases, deaths, and tests by age and sex☆58Updated last year
- CRAN Task View: Epidemiology☆24Updated last month
- ☆42Updated 2 months ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Updated 3 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆18Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- Bayesian SEIR model to estimate the effects of social-distancing on COVID-19☆27Updated 4 years ago
- Video lectures, slides and code for "The Mathematics and Statistics of Infectious Disease Outbreaks" course at Stockholm University☆35Updated 4 years ago
- ☆29Updated 5 months ago
- ☆27Updated 4 years ago
- Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'☆17Updated 4 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Updated 9 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 3 months ago
- ☆31Updated last month
- Course on nowcasting and forecasting of infectious disease dynamics☆21Updated last week
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆35Updated 2 months ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆62Updated last week
- Official website for RECON - The R Epidemics CONsortium☆30Updated last year
- A framework for data-driven stochastic disease spread simulations☆36Updated this week
- A tool to estimate time varying instantaneous reproduction number during epidemics☆100Updated this week
- Report templates and helper functions for applied epidemiology☆43Updated last week
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago