Alternatives and similar repositories for bnpsd

Users that are interested in bnpsd are comparing it to the libraries listed below

• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated 8 months ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆13Updated 5 years ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆15Updated 2 years ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 8 years ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 5 years ago
• popgenmethods / ldpop
  Two locus likelihoods and ARGs under changing population size
  ☆14Updated 2 months ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 3 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 2 weeks ago
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• mathii / europe_selection
  Analysis scripts from the paper "Eight thousand years of natural selection in Europe".
  ☆10Updated 9 years ago
• zhengxwen / SeqArray
  Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)
  ☆45Updated this week
• sunnyeesl / BigLD
  ☆21Updated 2 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆34Updated this week
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆12Updated last year
• Zilong-Li / vcfppR
  The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
  ☆15Updated this week
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• cannin / snp_plotter
  snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
  ☆19Updated last year
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 5 months ago
• QTCAT / qtcat
  Quantitative Trait Cluster Association Test in R
  ☆25Updated 4 years ago
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago
• bcm-uga / lfmm
  Fitting latent factor mixed models
  ☆13Updated 4 years ago
• dorolin / rearrvisr
  An R package to detect, classify, and visualize genome rearrangements
  ☆14Updated 4 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 7 years ago
• chaolongwang / SEEKIN
  SEEKIN: SEquence-based Estimation of KINship
  ☆14Updated 7 years ago