Computes affinity between two entities based on their co-occurrence
☆30Jan 28, 2026Updated 4 months ago
Alternatives and similar repositories for CooccurrenceAffinity
Users that are interested in CooccurrenceAffinity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to find species interactions from co-occurrence data☆16Feb 27, 2024Updated 2 years ago
- Count kmers with a more efficient (faster) hash table☆24Jun 8, 2024Updated 2 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- basicTrendline: an R package for adding trendline and confidence interval of basic linear or nonlinear models and show equation to plot.☆13May 4, 2022Updated 4 years ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Jun 1, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 5 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 2 months ago
- Tools for ecological niche evolution assessment considering uncertainty☆15Mar 10, 2023Updated 3 years ago
- ☆60May 11, 2026Updated last month
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated 2 months ago
- ☆34Jan 27, 2026Updated 4 months ago
- Magnetosome gene cluster annotation, screening and visualization tool☆12Jul 2, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 5 years ago
- waka waka☆18Mar 18, 2021Updated 5 years ago
- Estimate Permutation p-Values for Random Forest Importance Metrics☆28Mar 25, 2025Updated last year
- ☆17Jun 2, 2026Updated last week
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 10 months ago
- A Computation of Functional Spaces and Functional Diversity Indices☆30Apr 24, 2026Updated last month
- R package ecolottery☆15Mar 14, 2026Updated 3 months ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated 2 years ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 5 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated 3 months ago
- Evolutionary Individual based modelling, mathematically grounded.☆13Mar 25, 2022Updated 4 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- faster haplotype-based admixture inference and dating software☆11Nov 25, 2025Updated 6 months ago
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 8 months ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- NEFF Calculator and MSA File Converter☆14May 6, 2026Updated last month
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 3 months ago