kpmainali / CooccurrenceAffinityLinks
Computes affinity between two entities based on their co-occurrence
☆27Updated last month
Alternatives and similar repositories for CooccurrenceAffinity
Users that are interested in CooccurrenceAffinity are comparing it to the libraries listed below
Sorting:
- ☆19Updated last month
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated this week
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- A model-based visualization method for microbiome data☆16Updated 2 years ago
- ☆12Updated 2 months ago
- a take on ordination plots using ggplot2☆65Updated last year
- babette is an R package to work with BEAST2☆46Updated this week
- ☆37Updated 9 months ago
- A textbook for phylogenetic comparative methods.☆44Updated 5 years ago
- A Toolbox for Manipulating Biological Sequences in R☆23Updated 2 years ago
- Calculate distances between phylogenetic trees in R☆32Updated this week
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆29Updated 3 months ago
- phylogenetic networks using ggplot2 and ggtree☆14Updated 7 months ago
- ☆18Updated 3 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆35Updated 10 months ago
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Updated 6 months ago
- An Amazing Shiny App☆17Updated 3 years ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- Analysis of Phylogenetics and Evolution☆70Updated 2 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated last week
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated last year
- Analysis with Profile Hidden Markov Models☆22Updated last year
- phylogenetic networks using ggplot2 and ggtree☆11Updated 3 weeks ago
- Metagenomics calibration R package☆20Updated 3 years ago
- Dendrograms for Evolutionary Analysis☆11Updated 5 years ago
- Racmacs R package for performing antigenic cartography☆22Updated last year
- K-mer Counting for Biological Sequence Analysis☆27Updated 6 years ago
- ☆19Updated 2 years ago
- Conditional Auto-Regressive LASSO in R☆20Updated 2 years ago
- Explore spaces of phylogenetic trees☆29Updated last year