kpmainali / CooccurrenceAffinity
Computes affinity between two entities based on their co-occurrence
☆26Updated last year
Alternatives and similar repositories for CooccurrenceAffinity:
Users that are interested in CooccurrenceAffinity are comparing it to the libraries listed below
- babette is an R package to work with BEAST2☆44Updated 6 months ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated this week
- R tools for integrating phylogenies and ecology☆33Updated last year
- ☆33Updated 2 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 6 months ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- phylogenetic networks using ggplot2 and ggtree☆13Updated 3 weeks ago
- a take on ordination plots using ggplot2☆63Updated 5 months ago
- ☆17Updated 3 years ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆27Updated 9 months ago
- A model-based visualization method for microbiome data☆16Updated last year
- An open database of vertebrate-virus interactions☆37Updated 3 weeks ago
- R package to run BEAST2☆11Updated last week
- Functions for phylogenetic analyses☆30Updated 10 months ago
- Conditional Auto-Regressive LASSO in R☆19Updated 2 years ago
- Create, modify and analyse phylogenetic trees in R☆20Updated this week
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆14Updated 6 months ago
- Ordination lectures for Ecological Methods in Oulu☆18Updated 5 months ago
- Phylogenetic ANalyses of DiversificAtion☆24Updated last week
- A template for creating modular shiny applications that meet academic standards and are reproducible☆17Updated this week
- An Amazing Shiny App☆17Updated 3 years ago
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆16Updated 10 months ago
- Metagenomics calibration R package☆18Updated 2 years ago
- A textbook for phylogenetic comparative methods.☆42Updated 5 years ago
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- phylogenetic networks using ggplot2 and ggtree☆11Updated 2 years ago
- Analysis of Phylogenetics and Evolution☆58Updated last month
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 8 months ago
- An R pakage to calculate diversity through Hill Numbers☆32Updated 8 months ago