Alternatives and similar repositories for CooccurrenceAffinity:

Users that are interested in CooccurrenceAffinity are comparing it to the libraries listed below

• lamho86 / phylolm
  ☆33Updated 4 months ago
• mikemc / differential-abundance-theory
  A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
  ☆12Updated last year
• ropensci / phylogram
  Dendrograms for Evolutionary Analysis
  ☆11Updated 5 years ago
• thijsjanzen / treestats
  ☆16Updated 6 months ago
• AnneChao / SpadeR
  SpadeR provides simple R functions to compute various biodiversity indices and related (dis)similarity measures based on individual-based…
  ☆29Updated 7 years ago
• skembel / picante
  R tools for integrating phylogenies and ecology
  ☆35Updated last year
• YunyiShen / CAR-LASSO
  Conditional Auto-Regressive LASSO in R
  ☆20Updated 2 years ago
• daijiang / rtrees
  rtrees: an R package to assemble phylogenetic trees from mega-trees
  ☆33Updated 9 months ago
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆45Updated this week
• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated 2 weeks ago
• mwpennell / geiger-v2
  A suite of methods and models for studying evolutionary radiations
  ☆23Updated 2 years ago
• emmanuelparadis / phylobench
  ☆11Updated 2 years ago
• viralemergence / virion
  An open database of vertebrate-virus interactions
  ☆38Updated this week
• heibl / ips
  R Interfaces to Phylogenetic Software
  ☆12Updated last month
• fawda123 / ggord
  a take on ordination plots using ggplot2
  ☆63Updated 7 months ago
• KlausVigo / ggnetworx
  phylogenetic networks using ggplot2 and ggtree
  ☆13Updated 2 months ago
• ms609 / TreeTools
  Create, modify and analyse phylogenetic trees in R
  ☆23Updated last month
• KlausVigo / tanggle
  phylogenetic networks using ggplot2 and ggtree
  ☆11Updated 2 years ago
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated 3 weeks ago
• TGuillerme / mulTree
  Performs MCMCglmm on multiple phylogenetic trees
  ☆12Updated last year
• mdkarcher / phylodyn
  ☆17Updated 3 years ago
• CenterForStatistics-UGent / RCM
  A model-based visualization method for microbiome data
  ☆16Updated last year
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆43Updated 5 years ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆22Updated 2 years ago
• crsl4 / phylogenetics-class
  A course in the theory and practice of phylogenetic inference from DNA sequence data
  ☆28Updated 2 weeks ago
• mikeblazanin / gcplyr
  gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
  ☆30Updated last month
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• daijiang / hillR
  An R pakage to calculate diversity through Hill Numbers
  ☆33Updated 10 months ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆56Updated 7 months ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆64Updated this week