Computes affinity between two entities based on their co-occurrence
☆29Jan 28, 2026Updated 7 months ago
Alternatives and similar repositories for CooccurrenceAffinity
Users that are interested in CooccurrenceAffinity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to find species interactions from co-occurrence data☆16Aug 19, 2026Updated 2 weeks ago
- Count kmers with a more efficient (faster) hash table☆23Jun 8, 2024Updated 2 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 6 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- basicTrendline: an R package for adding trendline and confidence interval of basic linear or nonlinear models and show equation to plot.☆13May 4, 2022Updated 4 years ago
- Tools for ecological niche evolution assessment considering uncertainty☆15Mar 10, 2023Updated 3 years ago
- ☆18Jun 26, 2025Updated last year
- ☆63Jul 16, 2026Updated last month
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 2 months ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆18Feb 29, 2024Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- The Biosynthetic Gene cluster Meta’omics abundance Profiler (BiG-MAP). A command-line tool that is able to profile the abundance and expr…☆35Jan 27, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- Evolutionary Individual based modelling, mathematically grounded.☆13Mar 25, 2022Updated 4 years ago
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated 5 months ago
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 6 years ago
- Magnetosome gene cluster annotation, screening and visualization tool☆12Jul 2, 2025Updated last year
- NEFF Calculator and MSA File Converter☆15May 6, 2026Updated 3 months ago
- Estimate Permutation p-Values for Random Forest Importance Metrics☆28Mar 25, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- waka waka☆18Mar 18, 2021Updated 5 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 2 months ago
- R package ecolottery☆15Mar 14, 2026Updated 5 months ago
- Population Genomics in R workshop☆13Mar 24, 2024Updated 2 years ago
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆15Apr 24, 2026Updated 4 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆31Jul 21, 2026Updated last month
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- R Interfaces to Phylogenetic Software