Microbial community analysis tools in R
☆22Aug 3, 2022Updated 4 years ago
Alternatives and similar repositories for mctoolsr
Users that are interested in mctoolsr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 4 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Slides and resources from my CSV Conf 2023 keynote☆16May 1, 2023Updated 3 years ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 9 months ago
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 11 years ago
- Cost-efficient genome-wide gene expression profiling☆16Dec 2, 2022Updated 3 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- GitKraken lesson (forked from HBS-RCS)☆10Mar 20, 2026Updated 4 months ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Jul 24, 2026Updated 2 weeks ago
- Workshop materials for SFSU SCIP 2022.☆16Jun 6, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Nov 7, 2014Updated 11 years ago
- ☆13Jun 1, 2021Updated 5 years ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 3 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 7 years ago
- microbiome R package☆318May 12, 2026Updated 2 months ago
- ☆44Nov 20, 2017Updated 8 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- ☆15Feb 7, 2025Updated last year
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆16Jun 24, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Command line client and Python libraries for CosmosID API☆13Oct 28, 2025Updated 9 months ago
- Metagenomics Analysis Tools☆24May 7, 2018Updated 8 years ago
- Links for Ecology and Evolution☆23Jul 15, 2019Updated 7 years ago
- ☆15Mar 14, 2023Updated 3 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆95Oct 1, 2025Updated 10 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Pipeline for automatic processing and quality control of mass spectrometry data☆14Jan 30, 2025Updated last year
- FUNGuild: parsing OTUs into functional guilds☆133Apr 26, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- My contributions to #TidyTuesday, a weekly data project.☆19Sep 27, 2021Updated 4 years ago
- Predict All Links In Ecological Networks☆13Dec 9, 2021Updated 4 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Utilities for community ecology analysis☆22Oct 2, 2020Updated 5 years ago
- Mutation tracker for microbial genomes☆14Sep 30, 2020Updated 5 years ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- Primer3Web is a simple web interface to primer3.☆17Aug 18, 2021Updated 4 years ago