Microbial community analysis tools in R
☆22Aug 3, 2022Updated 3 years ago
Alternatives and similar repositories for mctoolsr
Users that are interested in mctoolsr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 18, 2023Updated 2 years ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- Slides and resources from my CSV Conf 2023 keynote☆16May 1, 2023Updated 2 years ago
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 11 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 5 months ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- ☆43Nov 20, 2017Updated 8 years ago
- microbiome R package☆314Aug 19, 2025Updated 7 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 3 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- ☆16Jun 9, 2025Updated 9 months ago
- Code and data to reproduce the examples in the paper Bayesian views of generalized additive modelling.☆17Jan 6, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GitKraken lesson (forked from HBS-RCS)☆10Mar 20, 2026Updated last week
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jun 24, 2024Updated last year
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Feb 20, 2026Updated last month
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 5 months ago
- ☆15Mar 14, 2023Updated 3 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆17Mar 26, 2025Updated last year
- IPython notebooks -- mostly sedimentology-related☆15Nov 29, 2022Updated 3 years ago
- What the Package Does (One Line, Title Case)☆13Nov 17, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- My contributions to #TidyTuesday, a weekly data project.☆19Sep 27, 2021Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆35Oct 26, 2020Updated 5 years ago
- Workshop materials for SFSU SCIP 2022.☆16Jun 6, 2022Updated 3 years ago
- ☆14Feb 7, 2025Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆93Oct 1, 2025Updated 5 months ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Utilities for community ecology analysis☆20Oct 2, 2020Updated 5 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆15Jun 24, 2025Updated 9 months ago
- FUNGuild: parsing OTUs into functional guilds☆129Apr 26, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆13Jul 30, 2019Updated 6 years ago
- Primer3Web is a simple web interface to primer3.☆17Aug 18, 2021Updated 4 years ago
- Reproduce "Geofaceting -- align small-multiples for regions in a spatially meaningful way"☆12Jan 22, 2025Updated last year
- ☆16Mar 21, 2023Updated 3 years ago
- ☆13Oct 17, 2021Updated 4 years ago
- ☆12Oct 19, 2024Updated last year
- SNA project☆26Nov 11, 2012Updated 13 years ago