microbialphenotypes / OMP-ontologyLinks
This repository contains the editors's working copy of OMP and public release files.
☆8Updated last year
Alternatives and similar repositories for OMP-ontology
Users that are interested in OMP-ontology are comparing it to the libraries listed below
Sorting:
- Minimum Information about any (X) Sequence” (MIxS) specification☆46Updated this week
- OHMI: The Ontology of Host-Microbiome Interactions☆12Updated 3 years ago
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆21Updated 2 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- Get, parse, and extract information from the SRA metadata files☆42Updated 2 years ago
- Sample search by metadata and features☆47Updated last year
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆18Updated 3 weeks ago
- ☆14Updated 6 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated last month
- Bioinformatics Pipeline and Visualization resources☆56Updated 9 months ago
- A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA☆14Updated 2 months ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated last month
- A program to download large amounts of sequences from NCBI databases.☆21Updated 4 months ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆66Updated last year
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆29Updated last month
- Managing metadata and policy around metadata in NMDC☆2Updated last year
- A tool for agile functional analysis of shotgun metagenomic data☆24Updated 9 months ago
- Webin command line submission program.☆33Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- An information model for representing variant annotations.☆20Updated this week
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆35Updated last year
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Updated 9 years ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆41Updated 2 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆21Updated 4 years ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆67Updated 2 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago