Alternatives and similar repositories for nmdc-metadata

Users that are interested in nmdc-metadata are comparing it to the libraries listed below

• GenomicsStandardsConsortium / mixs
  Minimum Information about any (X) Sequence” (MIxS) specification
  ☆45Updated this week
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆18Updated this week
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• monarch-initiative / pyphetools
  Python Phenopacket Tools
  ☆14Updated 4 months ago
• pubseq / bh20-seq-resource
  Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
  ☆13Updated 2 years ago
• Planteome / plant-trait-ontology
  Explore the Plant Trait Ontology on the Planteome site.
  ☆42Updated 2 weeks ago
• phenopackets / phenopacket-format
  ☆26Updated 5 years ago
• ncbi / pipelines
  ☆14Updated 6 years ago
• geneontology / helpdesk
  The Gene Ontology Helpdesk
  ☆16Updated 3 months ago
• Knowledge-Graph-Hub / kg-microbe
  ☆18Updated 3 weeks ago
• microbialphenotypes / OMP-ontology
  This repository contains the editors's working copy of OMP and public release files.
  ☆8Updated last year
• fairgenomes / fairgenomes-semantic-model
  FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.
  ☆12Updated 3 months ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆24Updated 9 months ago
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• GenEpiO / genepio
  The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…
  ☆21Updated last month
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• pato-ontology / pato
  PATO - the Phenotype And Trait Ontology
  ☆59Updated this week
• ejp-rd-vp / CDE-semantic-model
  Semantic data model of the set of common data elements for rare disease registration
  ☆12Updated last year
• TheJacksonLaboratory / hpo-web
  a web application to search and navigate the Human Phenotype Ontology (HPO)
  ☆14Updated 2 weeks ago
• EcologicalSemantics / ecocore
  An ontology of core ecological entities
  ☆16Updated last year
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆64Updated 3 years ago
• quelopes / GeNNet
  Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.
  ☆10Updated 6 years ago
• microbiomedata / nmdc-schema
  National Microbiome Data Collaborative (NMDC) unified data model
  ☆33Updated this week
• MaayanLab / FAIRshake
  ☆10Updated 7 months ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆47Updated this week
• monarch-initiative / owlsim-v3
  Ontology Based Profile Matching
  ☆17Updated 3 years ago
• obophenotype / ncbitaxon
  Build for NCBITaxon
  ☆27Updated 2 months ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 6 years ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago