respiratory-immunology-lab / metabolome-lipidome-MSDIAL
Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.
☆15Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for metabolome-lipidome-MSDIAL
- Construct database and identify metabolites.☆3Updated 2 years ago
- R package for MetFrag☆24Updated 7 years ago
- On-instrument and post-acquisition targeted feature extraction☆12Updated 5 months ago
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆33Updated 3 years ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆26Updated last year
- 5-day workshop on Metabolomics and Data Analysis☆16Updated 5 years ago
- Supporting material for "Processing and visualization of metabolomics data using R"☆18Updated 7 years ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Updated 5 years ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Updated 3 years ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆18Updated 6 years ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆42Updated 3 weeks ago
- Core utilities for metabolomics.☆9Updated last month
- A collection of common mz values found in mass spectrometry.☆19Updated 4 months ago
- Quantitative features for mass spectrometry data☆25Updated last month
- Create .mzML files through the R Console☆11Updated 2 years ago
- Interactive software to analyze and browse mass spectrometry data☆22Updated last year
- Data Mining and Analysis of Lipidomics datasets in R☆28Updated last year
- Assigning precursor-product ion relationships in indiscriminant MS/MS data☆12Updated 5 months ago
- Chemical Similarity Enrichment analysis of metabolomics datasets☆27Updated 3 months ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆36Updated 6 months ago
- ☆28Updated this week
- R codes for creating metamapp graphs and files☆8Updated 2 years ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Updated 10 months ago
- Core Utils for Mass Spectrometry Data☆16Updated 2 weeks ago
- Rocker image for metabolomics data analysis☆13Updated 2 months ago
- Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.☆16Updated 2 months ago
- The R for Mass Spectrometry meta-package☆16Updated 10 months ago
- tidymass☆53Updated 10 months ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆21Updated 5 years ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆18Updated 9 months ago