Alternatives and similar repositories for metabolome-lipidome-MSDIAL

Users that are interested in metabolome-lipidome-MSDIAL are comparing it to the libraries listed below

• vuongle2 / BiomeNED

  View on GitHub
  BiomeNED main code
  ☆12Jul 25, 2019Updated 6 years ago
• shuzhao-li-lab / Notebooks-computational-metabolomics

  View on GitHub
  Notebooks in computational metabolomics
  ☆15Feb 3, 2025Updated last year
• yufree / metaworkflow

  View on GitHub
  Online workflow guidelines for metabolomics
  ☆24Jan 4, 2026Updated last month
• workflow4metabolomics / workflow4metabolomics

  View on GitHub
  Workflow4Metabolomics meta repository
  ☆11May 23, 2025Updated 8 months ago
• tipputa / MS-LIMA-Standard

  View on GitHub
  Mass spectral library manager
  ☆13Apr 9, 2020Updated 5 years ago
• idslme / IDSL.IPA

  View on GitHub
  Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…
  ☆15Jun 1, 2023Updated 2 years ago
• YuanyueLi / MSEntropy

  View on GitHub
  Spectral entropy for mass spectrometry data.
  ☆35Dec 25, 2025Updated last month
• QizhiSu / mspcompiler

  View on GitHub
  Compile Mass Spectral Libraries from Various Sources
  ☆17May 3, 2024Updated last year
• yufree / enviGCMS

  View on GitHub
  GC/LC-MS data analysis for environmental science
  ☆17May 20, 2025Updated 8 months ago
• EMSL-Computing / PeakDecoder

  View on GitHub
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆16Apr 25, 2023Updated 2 years ago
• joannawolthuis / MetaboShiny

  View on GitHub
  Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
  ☆17Updated this week
• rformassspectrometry / CompoundDb

  View on GitHub
  Creating and using (chemical) compound databases
  ☆19Jan 28, 2026Updated 3 weeks ago
• madeleineernst / pyMolNetEnhancer

  View on GitHub
  ☆20Jul 12, 2023Updated 2 years ago
• pattilab / DecoID

  View on GitHub
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆19Jan 24, 2024Updated 2 years ago
• y-bar / mmetrics

  View on GitHub
  Easy computation of Marketing Metrics in R
  ☆28Aug 14, 2019Updated 6 years ago
• domdfcoding / pynist

  View on GitHub
  PyMassSpec extension for searching mass spectra using NIST's Mass Spectrum Search Engine.
  ☆22Jan 20, 2026Updated 3 weeks ago
• petemeng / bioinformatics

  View on GitHub
  bioinformatics for peter
  ☆11Apr 8, 2025Updated 10 months ago
• eMetaboHUB / MS-CleanR

  View on GitHub
  ☆28Nov 30, 2023Updated 2 years ago
• RogerGinBer / RHermes

  View on GitHub
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆28Jun 4, 2025Updated 8 months ago
• Cyanivde / technion-anki

  View on GitHub
  Anki decks for Technion courses
  ☆13Apr 26, 2024Updated last year
• mxndrwgrdnr / UCB_CYPLAN255_2024

  View on GitHub
  Course repo for material related to CYPLAN 255 at UC Berkeley, Spring 2024
  ☆11May 7, 2024Updated last year
• IndrajeetPatil / dry-r-package-development

  View on GitHub
  Tips on not repeating yourself during R package development
  ☆33Jan 13, 2026Updated last month
• oloBion / Retip

  View on GitHub
  Retip - Retention Time prediction for metabolomics
  ☆32Jun 6, 2024Updated last year
• melbintgen / deep-learning-for-scRNAseq

  View on GitHub
  ☆11Oct 6, 2025Updated 4 months ago
• tacular-omics / peptacular

  View on GitHub
  A Python package for amino acid sequence analysis. Proforma 2.1 complicant.
  ☆14Feb 6, 2026Updated last week
• Aryia-Behroziuan / numpy

  View on GitHub
  Quickstart tutorial Prerequisites Before reading this tutorial you should know a bit of Python. If you would like to refresh your memory,…
  ☆13Dec 14, 2021Updated 4 years ago
• lemaslab / rump

  View on GitHub
  A Reproducible Untargeted Metabolomics Data Processing Pipeline
  ☆11Mar 18, 2021Updated 4 years ago
• garggaurav / CS61B-DataStructures

  View on GitHub
  Course Projects for CS 61B, the data structures class at UC Berkeley, Spring 2014
  ☆10Oct 7, 2014Updated 11 years ago
• ander428 / CausalModels

  View on GitHub
  An R library for estimating causal effects
  ☆12Apr 25, 2025Updated 9 months ago
• hduongtrong / ST205A

  View on GitHub
  Homework for STAT 205A - Berkeley
  ☆13Dec 9, 2014Updated 11 years ago
• rformassspectrometry / metaRbolomics-book

  View on GitHub
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Mar 23, 2021Updated 4 years ago
• hcji / DeepEI

  View on GitHub
  Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks
  ☆36Mar 21, 2024Updated last year
• pnnl / deimos

  View on GitHub
  ☆37Dec 15, 2025Updated 2 months ago
• wwylab / CliPP

  View on GitHub
  Clonal structure identification through penalizing pairwise differences
  ☆11Nov 25, 2025Updated 2 months ago
• cgmonline / cgmonline

  View on GitHub
  CGM 主站
  ☆11Mar 10, 2025Updated 11 months ago
• erfangc / ReactTable

  View on GitHub
  HTML Table with Group By functionality Implemented using Facebook react.js
  ☆10Aug 1, 2016Updated 9 years ago
• HUBioDataLab / CROssBARv2-KG

  View on GitHub
  This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.
  ☆11Feb 4, 2026Updated 2 weeks ago
• bjonnh / FilePermissionsPlugin

  View on GitHub
  File Permissions Plugin is a repository that provides a simple plugin to change file permissions directly from IntelliJ.
  ☆10Apr 27, 2025Updated 9 months ago
• Dhanush123 / cs182

  View on GitHub
  Deep Neural Network course @ UC Berkeley, taken Spring 2019
  ☆10Dec 7, 2022Updated 3 years ago