Alternatives and similar repositories for spark-on-slurm

Users that are interested in spark-on-slurm are comparing it to the libraries listed below

• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• datasnakes / beRi
  beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
  ☆14Updated 5 years ago
• KHP-Informatics / bioindocker15
  [Bio in Docker] Symposium 2015
  ☆21Updated 7 years ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆27Updated 7 years ago
• kokrah / HTShape
  Shape analysis of high-throughput data
  ☆19Updated 9 years ago
• greenelab / continuous_analysis
  Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
  ☆82Updated 4 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 3 years ago
• mcapuccini / TheSparkBox
  TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.
  ☆12Updated 7 years ago
• olgabot / kvector
  kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths
  ☆10Updated 8 years ago
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• benediktrauscher / msaR
  The BioJS MSA viewer wrapped into an R package
  ☆12Updated 8 years ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 5 years ago
• OHDSI / FuzzyForest
  [Under development] Random classification and regression trees
  ☆17Updated 9 years ago
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 6 years ago
• clemsonciti / singularity-in-jupyter-notebook
  Using singularity containers from Jupyter Notebook
  ☆9Updated 8 years ago
• Bioconductor / UseBioconductor
  Training material for intermediate R / Bioconductor courses
  ☆17Updated 2 years ago
• pschorderet / NEAT
  NExt generation Analysis Toolbox
  ☆14Updated 9 years ago
• Teichlab / RCA
  Residual Component Analysis
  ☆10Updated 8 years ago
• MonashBioinformaticsPlatform / bio-ansible
  Proof of concept to use ansible + Lmod to deploy a bioinformatics server
  ☆24Updated last month
• cjprybol / reproducibility-via-singularity
  A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
  ☆26Updated 8 years ago
• opentargets-archive / genetics-app
  Open Targets Genetics UI
  ☆15Updated 5 months ago
• related-sciences / gwas-analysis
  GWAS data analysis experiments
  ☆24Updated 5 years ago
• datasnakes / renv
  Creating virtual environments for R.
  ☆17Updated 5 years ago
• StatGenPRD / STOPGAP
  Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…
  ☆11Updated 5 years ago
• ycrc / dSQ
  dead Simple Queue - Slurm arrays for files with jobs in them.
  ☆24Updated 3 years ago
• BauerLab / VariantSpark
  VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
  ☆33Updated 7 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 2 months ago
• lifeomic / spark-vcf
  Spark VCF data source implementation for Dataframes
  ☆14Updated 3 years ago