Alternatives and similar repositories for spark-on-slurm

Users that are interested in spark-on-slurm are comparing it to the libraries listed below

• NIH-HPC / spark-slurm
  Tool for running/managing ad hoc spark clusters on a Slurm cluster
  ☆25Updated 3 years ago
• clemsonciti / singularity-in-jupyter-notebook
  Using singularity containers from Jupyter Notebook
  ☆9Updated 8 years ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 4 years ago
• bgruening / docker-ipython-notebook
  IPython running in a docker container. This image can be used to integrate IPython into Galaxy
  ☆17Updated 9 years ago
• mcapuccini / TheSparkBox
  TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.
  ☆12Updated 6 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• KHP-Informatics / bioindocker15
  [Bio in Docker] Symposium 2015
  ☆21Updated 7 years ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆27Updated 6 years ago
• Sage-Bionetworks-Challenges / SMC-RNA-Challenge
  ☆9Updated 7 years ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated 7 months ago
• phnmnl / phenomenal-h2020
  Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project
  ☆22Updated 2 months ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• common-workflow-lab / gxargparse
  Automated CWL and Galaxy XML generation for Python tools that use argparse and click
  ☆11Updated 5 years ago
• PriceLab / snapr
  SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
  ☆25Updated 10 years ago
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 9 years ago
• kokrah / HTShape
  Shape analysis of high-throughput data
  ☆19Updated 9 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• BD2KGenomics / cgcloud
  Image and VM management for Jenkins, Spark and Mesos clusters in EC2
  ☆22Updated 4 years ago
• jupyterhub / jupyterhub-deploy-hpc
  Documented examples of Jupyterhub deployment in HPC settings
  ☆36Updated 11 months ago
• olgabot / kvector
  kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths
  ☆10Updated 8 years ago
• snewhouse / enrichr-api
  python script to programmatically enrich your data using Enrichr API
  ☆12Updated 7 years ago
• dmlond / docker_bwa_aligner
  Docker containers that demonstrate a proof of concept bwa alignment workflow
  ☆14Updated 10 years ago
• greenelab / GCB535
  Materials for GCB535 at Penn.
  ☆20Updated 6 years ago
• ycrc / dSQ
  dead Simple Queue - Slurm arrays for files with jobs in them.
  ☆24Updated 3 years ago
• datasnakes / beRi
  beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
  ☆14Updated 5 years ago
• adrianveres / polo
  Python Optimal Leaf Ordering for Hierarchical Clustering
  ☆21Updated 7 years ago
• ISA-tools / Risa
  Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…
  ☆20Updated 6 years ago
• cjprybol / reproducibility-via-singularity
  A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
  ☆26Updated 8 years ago