Alternatives and similar repositories for spark-on-slurm

Users that are interested in spark-on-slurm are comparing it to the libraries listed below

• phnmnl / phenomenal-h2020
  Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project
  ☆22Updated 7 months ago
• kokrah / HTShape
  Shape analysis of high-throughput data
  ☆19Updated 9 years ago
• greenelab / continuous_analysis
  Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
  ☆83Updated 4 years ago
• cjprybol / reproducibility-via-singularity
  A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
  ☆26Updated 9 years ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆27Updated 7 years ago
• mcapuccini / TheSparkBox
  TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.
  ☆12Updated 7 years ago
• KHP-Informatics / bioindocker15
  [Bio in Docker] Symposium 2015
  ☆21Updated 8 years ago
• NIH-HPC / spark-slurm
  Tool for running/managing ad hoc spark clusters on a Slurm cluster
  ☆25Updated 3 years ago
• EvolutionaryGenomics / scalability-reproducibility-chapter
  Data and workflow examples
  ☆16Updated 7 years ago
• Caleydo / caleydo
  Caleydo - Visualization for Molecular Biology
  ☆60Updated 8 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 6 years ago
• common-workflow-lab / gxargparse
  Automated CWL and Galaxy XML generation for Python tools that use argparse and click
  ☆11Updated 6 years ago
• datasnakes / beRi
  beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
  ☆14Updated 6 years ago
• cooperative-computing-lab / makeflow-examples
  Example workflows for the Makeflow workflow system.
  ☆34Updated 8 months ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• BauerLab / VariantSpark
  VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
  ☆33Updated 8 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 7 years ago
• benediktrauscher / msaR
  The BioJS MSA viewer wrapped into an R package
  ☆12Updated 9 years ago
• ycrc / dSQ
  dead Simple Queue - Slurm arrays for files with jobs in them.
  ☆24Updated 3 years ago
• lifeomic / spark-vcf
  Spark VCF data source implementation for Dataframes
  ☆14Updated 3 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 4 years ago
• datasnakes / renv
  Creating virtual environments for R.
  ☆17Updated 6 years ago
• CampagneLaboratory / NextflowWorkbench
  An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…
  ☆22Updated 9 years ago
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 7 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• FDA / fda-hive
  FDA High-performance Integrated Virtual Environment (HIVE)
  ☆38Updated last month
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• ialbert / pyblue-central
  Static website generator for sciencey people
  ☆30Updated last year