Alternatives and similar repositories for parkour2:

Users that are interested in parkour2 are comparing it to the libraries listed below

• bihealth / digestiflow-server
  Web-based database system for flow cell management (incl. REST API)
  ☆15Updated last year
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated last year
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated last year
• daihang16 / nubeamdedup
  Removing PCR duplicates for sequencing reads.
  ☆14Updated 4 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated this week
• SGBC / galaksio
  An easy-to-use way for running Galaxy workflows.
  ☆20Updated 5 years ago
• ARTbio / tools-artbio
  Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)
  ☆12Updated 3 weeks ago
• refresh-bio / GTC
  GenoTypes Compressor
  ☆15Updated 2 years ago
• pgp-pasteur-fr / MetaGenSense
  A web application framework for analysis and visualization of High throughput Sequencing metagenomic data
  ☆10Updated 8 years ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated 3 weeks ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆31Updated 3 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 2 months ago
• RahmanTeam / OpEx
  The OpEx (Optimised Exome) pipeline
  ☆9Updated 6 years ago
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆30Updated 2 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated 6 months ago
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆22Updated last week
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago
• liuyigh / PyHRM
  High Resolution Melt Analysis in Python
  ☆20Updated 3 years ago
• jvrana / primer3-py-plus
  A easy-to-use Python API for Primer3 primer design.
  ☆15Updated 2 years ago
• maxplanck-ie / parkour
  Moved to: https://github.com/maxplanck-ie/parkour2
  ☆33Updated 2 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆41Updated this week
• RNAcentral / rnacentral-webcode
  RNAcentral website source code
  ☆33Updated this week
• statgen / fastQValidator
  Validate FastQ Files
  ☆36Updated 6 years ago
• ARTbio / GalaxyKickStart
  Ansible playbooks for Galaxy Server deployment
  ☆24Updated 2 years ago
• fmfi-compbio / coral-basecaller
  ☆12Updated 4 years ago