Alternatives and similar repositories for sge2slurm:

Users that are interested in sge2slurm are comparing it to the libraries listed below

• lh3 / asub
  A unified array job submitter for LSF, SGE/UGE and Slurm
  ☆32Updated 4 months ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated last week
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• broadinstitute / wdltool
  ☆18Updated 7 years ago
• bioinformed / vgraph
  vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…
  ☆42Updated 3 years ago
• brentp / slurmpy
  submit jobs to slurm with quick-and-dirty python
  ☆95Updated 2 years ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 7 years ago
• gt1 / libmaus2
  collection of data structures and algorithms
  ☆18Updated 5 years ago
• gglusman / genome-fingerprints
  Software for creating and comparing genome fingerprints.
  ☆11Updated 7 months ago
• ChillarAnand / fadapa
  FAstqc DAta PArser - A minimal parser to parse FastQC output data.
  ☆16Updated 8 years ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 5 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆58Updated 6 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 7 months ago
• GATB / gatb-core
  Core library of the Genome Analysis Toolbox with de-Bruijn graph
  ☆63Updated 2 weeks ago
• optimuscoprime / autoadapt
  Automatic quality control for FASTQ sequencing files
  ☆13Updated 6 years ago
• alexpreynolds / soda
  Python-based UCSC genome browser snapshot-taker and gallery-maker
  ☆12Updated 9 months ago
• mklarqvist / tachyon
  High-level API for storing and querying sequence variant data
  ☆20Updated 5 years ago
• higlass / higlass-manage
  A utility script to manage local docker instances of HiGlass
  ☆24Updated last year
• osilander / bonito_benchmarks
  Benchmarking bonito basecaller using E. coli assemblies
  ☆11Updated 3 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• ryanlayer / ssec2
  Stupid Simple Elastic Compute Cloud
  ☆16Updated last year
• arq5x / ggd
  ☆43Updated 8 years ago
• statgen / libStatGen
  Useful set of classes for creating statistical genetic programs.
  ☆52Updated last year
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• brentp / align
  sequence alignment. global, local, glocal.
  ☆41Updated 8 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 5 years ago
• afgane / slurmscale
  An external library for delivering Slurm Elastic Computing.
  ☆11Updated 7 years ago