luyang-ai4med / POPDxLinks
Python implementation of POPDx - Predictions for unseen, rare, and common labels.
☆11Updated last year
Alternatives and similar repositories for POPDx
Users that are interested in POPDx are comparing it to the libraries listed below
Sorting:
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆96Updated 2 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆70Updated 7 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆89Updated 2 months ago
- Electronic Health Record Analysis with Python.☆329Updated this week
- MASI Lab Implementation of PheWAS in Python☆28Updated last year
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆196Updated 2 weeks ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆74Updated 2 weeks ago
- source codes based on PyTorch to analyze EHR☆149Updated 2 years ago
- ☆40Updated 3 years ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆292Updated 4 years ago
- ☆83Updated 10 months ago
- https://celehs.github.io/PheCAP/☆22Updated 4 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆209Updated 7 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆120Updated 2 years ago
- ☆163Updated last week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Updated last month
- ☆67Updated 4 years ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆65Updated 6 months ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆51Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆161Updated last week
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 5 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆312Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆49Updated 2 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆31Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated 7 months ago
- OMOP standardization pipeline for ICU databases☆45Updated 11 months ago
- Code for doing machine learning with various EHRs☆22Updated 2 years ago
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆64Updated 2 years ago