luyang-ai4med / POPDxLinks
Python implementation of POPDx - Predictions for unseen, rare, and common labels.
☆11Updated last year
Alternatives and similar repositories for POPDx
Users that are interested in POPDx are comparing it to the libraries listed below
Sorting:
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆64Updated 4 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated last month
- ☆41Updated 3 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆84Updated last week
- Electronic Health Record Analysis with Python.☆309Updated last week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆85Updated 2 months ago
- MASI Lab Implementation of PheWAS in Python☆28Updated 11 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆156Updated last week
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆186Updated last week
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- https://celehs.github.io/PheCAP/☆22Updated 4 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆196Updated 4 months ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆289Updated 4 years ago
- Code for doing machine learning with various EHRs☆21Updated 2 years ago
- ☆69Updated last year
- ☆65Updated 3 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆49Updated last year
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆54Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆39Updated 3 weeks ago
- ☆78Updated 7 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆38Updated this week
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆60Updated 2 years ago
- Installing MIMIC-IV in a local Postgres database☆42Updated 4 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago