celehs / PheCAP
https://celehs.github.io/PheCAP/
☆20Updated 3 years ago
Related projects: ⓘ
- MASI Lab Implementation of PheWAS in Python☆27Updated 11 months ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆26Updated 3 years ago
- An R package for evaluating phenotype algorithms.☆17Updated 2 weeks ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆28Updated last year
- ☆51Updated 4 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆46Updated 2 months ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆23Updated 2 years ago
- R package for delineating temporal dataset shifts in Eletronic Health Records☆15Updated 4 months ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆23Updated 3 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 3 years ago
- Public release of the DeepPhe analytic software☆30Updated last year
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆33Updated 3 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆35Updated last year
- R package with netDx software and data for examples☆12Updated last year
- ☆23Updated 6 years ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆53Updated last year
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- Examples on using EpiGraphDB☆25Updated 3 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- ☆52Updated 2 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆43Updated last year
- Phenotype and genotype-based patient similarity☆11Updated 4 years ago
- ACT COVID Ontology☆15Updated 2 years ago
- Python scripts to extract and pre-process UKB data☆30Updated 5 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- Data structures and code to read/write BioC XML and Json.☆29Updated last year
- AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator☆31Updated last month
- ☆10Updated 3 years ago
- OMOP-CDM Extension for genomic data☆9Updated 4 years ago
- R package for Cardiovascular Risk Dataset and Data generation script☆13Updated 5 years ago