Alternatives and similar repositories for PheCAP

Users that are interested in PheCAP are comparing it to the libraries listed below

• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆19Updated last week
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆29Updated 4 years ago
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆49Updated last year
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 9 months ago
• BaderLab / netDx
  R package with netDx software and data for examples
  ☆12Updated 2 years ago
• National-Clinical-Cohort-Collaborative / Phenotype_Data_Acquisition
  The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
  ☆64Updated last month
• EHDEN / ETL-UK-Biobank
  ETL UK-Biobank
  ☆15Updated 2 years ago
• nliulab / AutoScore
  AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator
  ☆33Updated last month
• spiros / phemap
  Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
  ☆37Updated 2 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• OHDSI / OMOP-Queries
  ☆29Updated 7 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• OHDSI / InspectOMOP
  InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…
  ☆14Updated 5 months ago
• PhilAppleby / ukbb-srmed
  Text matching UK Biobank Self-Reported medication descriptions for medication classification
  ☆26Updated 3 years ago
• RuishanLiu / TrialPathfinder
  ☆64Updated 3 years ago
• OHDSI / StudyProtocolSandbox
  This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.
  ☆33Updated 2 months ago
• hms-dbmi / EHRtemporalVariability
  R package for delineating temporal dataset shifts in Eletronic Health Records
  ☆17Updated last year
• spiros / hdr-caliber-phenotype-library
  HDR UK National Phenotype Library
  ☆22Updated 2 years ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated last week
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆89Updated last year
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆110Updated 2 years ago
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆53Updated 2 years ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆46Updated this week
• landiisotta / convae_architecture
  ☆41Updated 3 years ago
• BenGlicksberg / ROMOP
  R package to easily interface with OMOP-formatted EHR data.
  ☆36Updated 5 years ago
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆26Updated 4 years ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆40Updated 4 years ago
• lrgr / multifactorial-immune-response
  Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
  ☆14Updated 7 years ago
• OHDSI / FeatureExtraction
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.
  ☆65Updated last week
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆141Updated last year