GeomMolDesign / HMRLinks
Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023
☆10Updated 2 years ago
Alternatives and similar repositories for HMR
Users that are interested in HMR are comparing it to the libraries listed below
Sorting:
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆94Updated 9 months ago
- ☆42Updated 2 years ago
- Official implementation of "Learning the language of protein structures"☆39Updated 3 months ago
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago
- The first large protein language model trained follows structure instructions.☆85Updated 4 months ago
- An awesome & curated list of docking papers☆115Updated 7 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆53Updated last year
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆49Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆69Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆95Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆119Updated 7 months ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆67Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- ☆18Updated last year
- Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…☆43Updated last year
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆133Updated 2 months ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33Updated 4 months ago
- ☆76Updated 8 months ago
- MSAGPT☆35Updated 10 months ago
- ☆130Updated 3 years ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Updated 2 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- ☆204Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 4 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Updated 2 years ago