jmschrei / bam2bwLinks
A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.
☆19Updated last month
Alternatives and similar repositories for bam2bw
Users that are interested in bam2bw are comparing it to the libraries listed below
Sorting:
- The AnnSQL package enables SQL based queries on AnnData objects.☆30Updated 2 weeks ago
- Diverse sampling for single-cell datasets☆16Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Machine learning methods for DNA sequence analysis.☆53Updated last week
- This repository hosts a minimal version of a Python API for BPNet.☆48Updated last week
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Updated 4 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆18Updated last year
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Updated last year
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆60Updated 2 weeks ago
- Annotated sequence data☆11Updated 7 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- liftover for python, made fast with cython☆89Updated 4 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Python bindings to UCSC BigWig and BigBed library☆33Updated 4 months ago
- ☆39Updated 2 months ago
- ☆36Updated last week
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆27Updated 2 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- ☆19Updated 2 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 2 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated 2 weeks ago
- Module for embedding igv.js in an IPython notebook☆78Updated 7 months ago
- Red-C data processing☆15Updated 2 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆93Updated last month
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆91Updated 6 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 7 months ago