Alternatives and similar repositories for alphafold3-pytorch

Users that are interested in alphafold3-pytorch are comparing it to the libraries listed below

• kyegomez / AlphaFold3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆784Updated last week
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆1,147Updated this week
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,683Updated last week
• chaidiscovery / chai-lab
  Chai-1, SOTA model for biomolecular structure prediction
  ☆1,648Updated last week
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,284Updated 9 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆722Updated last week
• Ligo-Biosciences / AlphaFold3
  Open source implementation of AlphaFold3
  ☆984Updated 8 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆733Updated 3 weeks ago
• evolutionaryscale / esm
  ☆1,934Updated last week
• Graylab / DL4Proteins-notebooks
  Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
  ☆390Updated 2 months ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆709Updated last month
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆542Updated last year
• jwohlwend / boltz
  Official repository for the Boltz-1 biomolecular interaction model
  ☆1,875Updated 3 weeks ago
• generatebio / chroma
  A generative model for programmable protein design
  ☆739Updated last year
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,256Updated last month
• aqlaboratory / openfold
  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
  ☆3,020Updated last month
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆602Updated last week
• RosettaCommons / RFdiffusion
  Code for running RFdiffusion
  ☆2,212Updated last month
• biotite-dev / biotite
  A comprehensive library for computational molecular biology
  ☆809Updated 2 weeks ago
• evo-design / evo
  Biological foundation modeling from molecular to genome scale
  ☆1,380Updated 3 months ago
• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆394Updated 11 months ago
• microsoft / bioemu
  Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning
  ☆381Updated this week
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆395Updated 10 months ago
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆457Updated 3 weeks ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆539Updated this week
• sokrypton / ColabFold
  Making Protein folding accessible to all!
  ☆2,253Updated 2 weeks ago
• togethercomputer / stripedhyena
  Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
  ☆377Updated last year
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆984Updated this week
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆440Updated 4 months ago
• google-deepmind / alphafold3
  AlphaFold 3 inference pipeline.
  ☆6,559Updated last week