This project is designed to find the potential modifications in bacterial genomes.
☆15Nov 6, 2024Updated last year
Alternatives and similar repositories for Hammerhead
Users that are interested in Hammerhead are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated 2 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated last year
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆39Apr 10, 2026Updated 6 months ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆15Jul 24, 2025Updated last year
- ☆12May 11, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- snapper☆14Jul 8, 2024Updated 2 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated 6 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆58Jul 9, 2026Updated 3 months ago
- MicrobiomeReview☆11Jun 6, 2023Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 4 months ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆32Sep 1, 2026Updated last month
- Overview of our data for microbial genomic benchmarking☆41Jun 19, 2026Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆71Aug 10, 2021Updated 5 years ago
- ☆13Sep 17, 2026Updated 3 weeks ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Sep 1, 2026Updated last month
- Metal Activity Heuristic of Metalloprotein and Enzymatic Sites (MAHOMES) - Predicts if a protein bound metal ion is enzymatic or non-enzy…☆11Apr 19, 2022Updated 4 years ago
- Monitor Library Genesis and Sci-Hub's torrent health☆16Aug 10, 2026Updated 2 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 11 months ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- ☆10Jul 23, 2020Updated 6 years ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆11Sep 26, 2019Updated 7 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 6 years ago
- POOL (Peptide Optimization with Optimal Learning): code for "Discovering de novo peptide substrates for enzymes using machine learning"☆10Oct 18, 2018Updated 7 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆61Nov 26, 2025Updated 10 months ago
- Listing of GPU based bioinformatics software & sites & publications☆12Jan 16, 2022Updated 4 years ago
- Protobuff and gRPC specifications for the MinKNOW LIMS Interface☆13Apr 20, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Chromosome-level synteny plotting using orthologous regions☆33Sep 19, 2024Updated 2 years ago
- ☆11Nov 24, 2025Updated 10 months ago
- Sage Robots A4 robot arm☆12Mar 2, 2022Updated 4 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 30, 2026Updated 3 months ago
- Evaluating Nanopore-based bacterial variant calling☆23Oct 7, 2026Updated last week