Alternatives and similar repositories for pyopenms-docs

Users that are interested in pyopenms-docs are comparing it to the libraries listed below

• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆150Updated last week
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆69Updated 4 years ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆30Updated 3 months ago
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆67Updated last month
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆82Updated 2 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for peptides carrying any modification.
  ☆73Updated 3 weeks ago
• gtluu / timsconvert
  ☆45Updated 10 months ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆21Updated last week
• bittremieuxlab / spectrum_utils
  Python package for efficient mass spectrometry data processing and visualization
  ☆163Updated last month
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆48Updated 2 weeks ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆54Updated 3 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 7 months ago
• griquelme / tidyms
  TidyMS: Tools for working with MS data in untargeted metabolomics
  ☆60Updated last year
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆67Updated this week
• teese / eccpy
  ECCpy is a program for EC50 calculation in python.
  ☆44Updated 2 years ago
• BlaisProteomics / multiplierz
  The Multiplierz Proteomics Library
  ☆24Updated last year
• mwang87 / MassQueryLanguage
  The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …
  ☆56Updated last month
• HUPO-PSI / psi-ms-CV
  HUPO-PSI mass spectrometry CV
  ☆40Updated last week
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆53Updated 4 years ago
• HuanLab / BUDDY
  Bottom-up MS/MS interrogation & Experiment-specific global annotation
  ☆30Updated last year
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆53Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 11 months ago
• MatteoLacki / timspy
  ☆22Updated 4 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆101Updated this week
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆144Updated last week
• michaelmarty / UniDec
  Universal Deconvolution of Mass and Ion Mobility Spectra
  ☆83Updated 3 weeks ago
• bihealth / NeatMS
  NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.
  ☆34Updated 4 years ago
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆44Updated 3 weeks ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆50Updated 7 months ago