Normalization methods for RNA-Seq expression data in Python.
☆11Jan 7, 2015Updated 11 years ago
Alternatives and similar repositories for normpy
Users that are interested in normpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Feb 19, 2017Updated 9 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 11 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 5 months ago
- Code used for the single-cell RNA-Seq batch effects paper☆12Sep 25, 2017Updated 9 years ago
- A GenePattern module for running the ssGSEA method☆17Mar 3, 2025Updated last year
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- A simple subcommand parser for Clojure☆14Jun 11, 2026Updated 4 months ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- HapMuC: Somatic Mutation Calling Using Heterozygous Germ Line Variants Near Candidate Mutations (Bioinformatics)☆10Jun 7, 2015Updated 11 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- An early-stage ☁️Nextcloud Client for 📱HarmonyOS 5 and 6☆11Jul 3, 2026Updated 3 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆17Oct 5, 2022Updated 4 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 7 years ago
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- A pipeline for the computational evaluation of RNA-Seq data☆40Updated this week
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 8 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 11 years ago
- python stuff I use☆21Feb 16, 2026Updated 8 months ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- time and report exception in riemann for functions☆20Apr 17, 2016Updated 10 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 9 years ago
- RNA-Seq pipeline☆36Jul 22, 2015Updated 11 years ago
- ☆17Sep 24, 2013Updated 13 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago