UC-Davis-molecular-computing / scadnanoLinks
Web application for designing DNA structures such as DNA origami.
☆30Updated 3 weeks ago
Alternatives and similar repositories for scadnano
Users that are interested in scadnano are comparing it to the libraries listed below
Sorting:
- Python scripting library for generating designs readable by scadnano.☆16Updated 2 months ago
- A graph-based workflow manager for computational chemistry pipelines☆67Updated 7 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆55Updated last year
- Enhanced sampling methods for molecular dynamics simulations☆40Updated 2 years ago
- Enable cheminformatics and quantum chemistry☆77Updated last year
- Python program for modelling and simulating polymers.☆39Updated 2 weeks ago
- STORMM: Structure and TOpology Replica Molecular Mechanics☆80Updated last month
- A GUI for automated sequence design of wireframe scaffolded DNA origami☆14Updated 4 years ago
- Scripts to convert between PDB to Tinker XYZ files, without using the existing TINKER programs for conversion.☆14Updated 4 years ago
- Automated Adaptive Absolute alchemical Free Energy calculator☆111Updated last week
- Synthesis generative model☆47Updated 6 months ago
- A Fast Chemical Graph Generator☆87Updated 2 years ago
- Code for the paper "JANUS: Parallel Tempered Genetic Algorithm Guided by Deep Neural Networks for Inverse Molecular Design"☆86Updated 3 years ago
- Trusted force field files for gromacs☆61Updated last year
- Main repository for METAGUI3☆20Updated 4 years ago
- ☆65Updated 6 months ago
- TrajCast: Force-Free MD Through Autoregressive Equivariant Networks☆55Updated last month
- Force Fields☆66Updated 9 months ago
- utilities for calculating bond dissociation energies☆37Updated 3 years ago
- a package to simulate fluid surfaces and biomembranes☆33Updated 2 months ago
- learning coarse-grained force fields☆64Updated 3 years ago
- ☆73Updated last month
- Sire Molecular Simulations Framework☆60Updated this week
- An application for configuring and running simulations with OpenMM☆74Updated this week
- ☆74Updated 2 weeks ago
- ☆28Updated 2 years ago
- OpenMM plugin to interface with PLUMED☆69Updated 8 months ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆90Updated 9 months ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated 3 weeks ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆86Updated 3 months ago