Alternatives and similar repositories for scadnano

Users that are interested in scadnano are comparing it to the libraries listed below

• UC-Davis-molecular-computing / scadnano-python-package
  Python scripting library for generating designs readable by scadnano.
  ☆16Updated 3 weeks ago
• paulrobustelli / Force-Fields
  Force Fields
  ☆64Updated 5 months ago
• lorenzo-rovigatti / oxDNA
  A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
  ☆55Updated last month
• GMPavanLab / Swarm-CG
  Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…
  ☆45Updated 10 months ago
• khinsen / MMTK
  The Molecular Modelling Toolkit
  ☆52Updated 3 months ago
• fgrunewald / Martini_PolyPly
  Tool for generating MARTINI Polymer itps and structures
  ☆16Updated 4 years ago
• rinikerlab / Ensembler
  Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…
  ☆53Updated last year
• mosdef-hub / gmso
  Flexible storage of chemical topology for molecular simulation
  ☆62Updated this week
• emleddin / pdbxyz-xyzpdb
  Scripts to convert between PDB to Tinker XYZ files, without using the existing TINKER programs for conversion.
  ☆14Updated 3 years ago
• patonlab / CASCADE
  CAlculation of NMR Chemical Shifts using Deep LEarning
  ☆58Updated 2 years ago
• TinkerTools / poltype2
  Poltype 2: Automated Parameterization for AMOEBA
  ☆45Updated last week
• ppqm / ppqm
  Enable cheminformatics and quantum chemistry
  ☆75Updated last year
• marrink-lab / polyply_1.0
  Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
  ☆160Updated last week
• weria-pezeshkian / FreeDTS
  a package to simulate fluid surfaces and biomembranes
  ☆32Updated last month
• YAMACS-SML / YAMACS
  Yasara plugins for Gromacs users
  ☆29Updated last year
• molmod / openmm-tutorial-msbs
  OpenMM tutorial for the MSBS course
  ☆167Updated this week
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆71Updated last month
• GrossfieldLab / loos
  LOOS: a lightweight object-oriented structure analysis library
  ☆125Updated 3 months ago
• ChemBioHTP / EnzyHTP
  EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling
  ☆25Updated this week
• michellab / a3fe
  Automated Adaptive Absolute alchemical Free Energy calculator
  ☆100Updated last week
• wehs7661 / boltzmann_generators
  A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Bou…
  ☆22Updated 2 years ago
• openmm / openmm-ml
  High level API for using machine learning models in OpenMM simulations
  ☆114Updated last week
• lorenzo-rovigatti / tacoxDNA
  A collection of tools for DNA modelling
  ☆21Updated last year
• KurtzmanLab / SSTMap
  Solvation Structure and Thermodynamic Mapping
  ☆39Updated last year
• aspuru-guzik-group / Tartarus
  A Benchmarking Platform for Realistic And Practical Inverse Molecular Design
  ☆76Updated 2 months ago
• maccallumlab / martini_openmm
  ☆54Updated 2 years ago
• cole-group / FEgrow
  An Open-Source Molecular Builder and Free Energy Preparation Workflow
  ☆127Updated last week
• paulrobustelli / CHEM101.6
  ☆125Updated last year
• Acellera / moleculekit
  MoleculeKit: Your favorite molecule manipulation kit
  ☆226Updated 3 weeks ago
• drorlab / pensa
  PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
  ☆140Updated 5 months ago