UC-Davis-molecular-computing / scadnanoLinks
Web application for designing DNA structures such as DNA origami.
☆28Updated 2 months ago
Alternatives and similar repositories for scadnano
Users that are interested in scadnano are comparing it to the libraries listed below
Sorting:
- Python scripting library for generating designs readable by scadnano.☆16Updated 3 weeks ago
- How to make images for publication using VMD☆35Updated 4 years ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- ☆125Updated last year
- A system for rapid identification and analysis of metal-organic frameworks☆59Updated 8 months ago
- A Fast Chemical Graph Generator☆83Updated 2 years ago
- learning coarse-grained force fields☆63Updated 3 years ago
- The Molecular Modelling Toolkit☆52Updated 3 months ago
- psi4+RDKit☆101Updated 2 months ago
- LOOS: a lightweight object-oriented structure analysis library☆125Updated 4 months ago
- Enable cheminformatics and quantum chemistry☆75Updated last year
- Python program for modelling and simulating polymers.☆39Updated 2 weeks ago
- High level API for using machine learning models in OpenMM simulations☆119Updated last month
- Flexible storage of chemical topology for molecular simulation☆62Updated this week
- A benchmark dataset for polymer informatics.☆73Updated 4 years ago
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆101Updated last year
- Code for the paper "JANUS: Parallel Tempered Genetic Algorithm Guided by Deep Neural Networks for Inverse Molecular Design"☆84Updated 3 years ago
- Force fields produced by the Open Force Field Initiative☆155Updated last month
- A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Bou…☆22Updated 2 years ago
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆45Updated 11 months ago
- An interoperable Python framework for biomolecular simulation.☆119Updated this week
- ☆31Updated 3 weeks ago
- Quantum to Molecular Mechanics (Q2MM)☆22Updated 2 years ago
- ASH is a Python-based computational chemistry and QM/MM environment, primarily for molecular calculations in the gas phase, explicit sol…☆76Updated this week
- AIMNet-NSE model☆45Updated last year
- A GUI for automated sequence design of wireframe scaffolded DNA origami☆14Updated 3 years ago
- Scripts to convert between PDB to Tinker XYZ files, without using the existing TINKER programs for conversion.☆14Updated 4 years ago
- Fragment molecules for quantum mechanics torsion scans☆45Updated 3 weeks ago
- OpenMM plugin to interface with PLUMED☆68Updated 5 months ago
- Experiments with expanded ensembles to explore chemical space☆192Updated 6 months ago